Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35720 719 / 0 OWL1 ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT1G59725 78 / 2e-15 DNAJ heat shock family protein (.1) AT3G47940 78 / 3e-15 DNAJ heat shock family protein (.1) AT3G08910 76 / 1e-14 DNAJ heat shock family protein (.1) AT5G01390 71 / 1e-13 DNAJ heat shock family protein (.1.2.3.4) AT4G28480 71 / 2e-13 DNAJ heat shock family protein (.1.2) AT2G20560 71 / 4e-13 DNAJ heat shock family protein (.1) AT3G62600 70 / 7e-13 ATERDJ3B DNAJ heat shock family protein (.1) AT1G10350 69 / 2e-12 DNAJ heat shock family protein (.1) AT1G80030 69 / 2e-12 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G158200 [exp] 956 / 0 AT2G35720 711 / 0.0 ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G035000 [exp] 72 / 9e-14 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 72 / 2e-13 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.015G066100 [exp] 71 / 3e-13 AT3G47940 436 / 5e-154 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 71 / 3e-13 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 71 / 3e-13 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 71 / 3e-13 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 71 / 4e-13 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 71 / 6e-13 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004716 [exp] 697 / 0 AT2G35720 676 / 0.0 ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008515 [exp] 696 / 0 AT2G35720 670 / 0.0 ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10013981 [exp] 76 / 2e-14 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10030803 [exp] 73 / 7e-14 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10015402 [exp] 73 / 8e-14 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10036668 [exp] 73 / 9e-14 AT3G47940 454 / 6e-161 DNAJ heat shock family protein (.1) Lus10013280 [exp] 72 / 2e-13 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10017687 [exp] 71 / 3e-13 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 71 / 4e-13 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 71 / 4e-13 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF11875 [poplar] [flax] DUF3395 Domain of unknown function (DUF3395)
Representative CDS sequence Show only first row Show all	>Potri.003G076600.6 pacid=42786133 polypeptide=Potri.003G076600.6.p locus=Potri.003G076600 ID=Potri.003G076600.6.v4.1 annot-version=v4.1 ATGGAGGAAGAAGAGGCGGGACCACCGAAGAGAGAACTGTACGCACTGCTCCAAGTGTCACCGGAAGCCACCGATGAAGAAATCAAAAAGGCTTATCGAC ATTGGGCTCAAGTTTATCATCCTGACAAGTACCAGGACTTTCATATGAAGCAAATAGCCACAGTGAACTTTCAACGAATATGTGAAGCTTATGAAATATT ATCGGATGAGTATAAAAGGCAAATATATGACATATATGGCATGGAAGGTATAACTTCTGGTCTGGAGCTTGGTCCGAAGCTCAATAAAGTAGAAGAGTTG AAGGAAGAGCTTCAAAGGTTGCGAAAGAAGAAGGAAGAAGAGAAGATGTTTGCGCATTTTCGACCTTCTGGCACTATACTCGCCCATTTGTCCATGCCAC AGTTTCTGGACGGTGATGGCATTATGCGAGGAATGGCTATGGCTAGCGAAGTTCAATCTCAATTATCTAAACGTACTGCGATTGCTATGGGTGGGAATTT GGAAGTTAATGGAAATTCTGGTGGTGGAGCTGCTTCGACTGTGCTCAGGCACCAGCTTTCTCCAGTTTCATCCATAGAATTCATAGCATCAGCTGGTTTA CGAGCACTTATTGGTGTGCAAACAACACGTAACCTATCTTCACACTCAACGGCTACAATTGCCATAGCAAAGTCTCTGAGGGATGGCTCAATTAATCTTT CCAATACCTGGACCCGCCAACTCTCTGAAACGGCAAATGGAAATATACAGCTTTTATTAGGTCCTGAGTCATCTATAGCAGTTGGATGGCAAAAGAAGGA GGAAAAAACGTCTGCTTCTGGAGAGCTGAAGATTGGCACAAGTTCTTTTGCCGCATCAGCACATTATACTTGTCGCTTTTCTTCAAAGTCTCATGGTCGT ATTGCAGGTAGATTTGGAAGCACTATGTTAGAGGTTGAAGTTGGCGGGGGAAGGAAATTGTCTAATTTCAGCACAGTTCGAACGCTGTATACAATTGGAA TTCAGGGCATCTTTTGGAAGTTTGAATTGCACCGTGGAGGACAAAAGTTGATTATTCCTATGTTGCTTTCCAGGCATTTGAATCCAGTGTTTGCAATTGG AGCATTTGTAATTCCAACGTCTCTTTACTTCCTACTCAAGAAATTCGTAGTCAAATCTTATTACCTTCGAAGGGAAAAGCAGAAGACTTCAGAAATTAAA GAGAGATCTTCTGCCCAGGTTCGAGAGGCAAGGATTGCGGCAGAAAAGGCACAACAACTATTACAAACTGTGGCCAATAGGAAAAGAAGTAGGCAGTCAG AAACAAATGGACTTGTAATCACTAAAGCAGTGTATGGAAATAGTAAAGCTTTGAAGAAAGCAGATAAATCAAGAGAAGTAAACAACGAATCAGCTTCAGA AGTCATTGATGTTACAATACCTCTTAATTTCCTCATTAATGATTCTGGCCAACTGCAGCTTCATGAGGGTGTAAAGAAGTCGGGAATTATGGGCTTCTGC GATCCTTGTCCAGGAGAACCTAAGCTTTTGCATGTGGAGTACACTTATGGTGGCCAAATATTTGAGGTGGAGGTTGATGATTATGCAGCATTGTTGATAC CCGAGAATCCCAGAGCATGA
AA sequence Show only first row Show all	>Potri.003G076600.6 pacid=42786133 polypeptide=Potri.003G076600.6.p locus=Potri.003G076600 ID=Potri.003G076600.6.v4.1 annot-version=v4.1 MEEEEAGPPKRELYALLQVSPEATDEEIKKAYRHWAQVYHPDKYQDFHMKQIATVNFQRICEAYEILSDEYKRQIYDIYGMEGITSGLELGPKLNKVEEL KEELQRLRKKKEEEKMFAHFRPSGTILAHLSMPQFLDGDGIMRGMAMASEVQSQLSKRTAIAMGGNLEVNGNSGGGAASTVLRHQLSPVSSIEFIASAGL RALIGVQTTRNLSSHSTATIAIAKSLRDGSINLSNTWTRQLSETANGNIQLLLGPESSIAVGWQKKEEKTSASGELKIGTSSFAASAHYTCRFSSKSHGR IAGRFGSTMLEVEVGGGRKLSNFSTVRTLYTIGIQGIFWKFELHRGGQKLIIPMLLSRHLNPVFAIGAFVIPTSLYFLLKKFVVKSYYLRREKQKTSEIK ERSSAQVREARIAAEKAQQLLQTVANRKRSRQSETNGLVITKAVYGNSKALKKADKSREVNNESASEVIDVTIPLNFLINDSGQLQLHEGVKKSGIMGFC DPCPGEPKLLHVEYTYGGQIFEVEVDDYAALLIPENPRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35720		OWL1	ORIENTATION UNDER VERY LOW FLU...		Potri.003G076600 [exp]	0	1
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Potri.002G176000 [exp]	5.29	0.7562
AT5G19830			Peptidyl-tRNA hydrolase family...		Potri.001G005000 [exp]	16.73	0.7315
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.002G258832 [exp]	22.20	0.6797
AT5G22790		RER1	reticulata-related 1 (.1)		Potri.009G150400 [exp]	24.79	0.7065
AT1G24267			Protein of unknown function (D...		Potri.001G058700 [exp]	46.90	0.6995
AT2G46060			transmembrane protein-related ...		Potri.014G087300 [exp]	54.99	0.6852
AT1G53720		ATCYP59, CYP59	cyclophilin 59 (.1)		Potri.005G097500 [exp]	58.86	0.6517
AT5G45590			Ribosomal protein L35 (.1)		Potri.001G133600 [exp]	62.83	0.6879
AT4G11980		ATNUDX14, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.003G118300 [exp]	64.37	0.6952
AT5G57140		ATPAP28, PAP28	purple acid phosphatase 28 (.1...		Potri.006G074500 [exp]	75.77	0.6771

Compare expression of checked genes

Potri.003G076600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.