Plant FIBer expression Database

Potri.003G076700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G158100
[exp]
154 / 9e-50 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G076700.1 pacid=42786930 polypeptide=Potri.003G076700.1.p locus=Potri.003G076700 ID=Potri.003G076700.1.v4.1 annot-version=v4.1
ATGGGGTTACCCATGGTGGCGGTGGCGAAGCTCAACCTCCTATTATCTACCTCCCACACCGGAGCCTCCTTGGTTACTTTCCTGCTATTCCCTTACGTGC
TTAAACTCACGTTCACTGTCAGGCTTTTTCGTCGAGCTTACACCGGTCTGCTCCACTCATCCAGGCTCTTCTTATTTCAGTTGAGCCAAATCGCCTTCGA
TACTGATCAACCTGCTCCGGTAGGCAATGATAGCACCAGACTGAGGAGAGCTCTGAGGTTAATTTATCAGAGAGTAACAAGAACAAGAAGGTCACAAACC
ACACAAGATGATGAGGATAATTTCAATGCCCTCTCCATGTTTTCTCTTTAG
AA sequence
>Potri.003G076700.1 pacid=42786930 polypeptide=Potri.003G076700.1.p locus=Potri.003G076700 ID=Potri.003G076700.1.v4.1 annot-version=v4.1
MGLPMVAVAKLNLLLSTSHTGASLVTFLLFPYVLKLTFTVRLFRRAYTGLLHSSRLFLFQLSQIAFDTDQPAPVGNDSTRLRRALRLIYQRVTRTRRSQT
TQDDEDNFNALSMFSL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G076700
[exp]
0 1
AT5G62680 Major facilitator superfamily ... Potri.001G376966
[exp]
3.16 0.8925
Potri.011G020275
[exp]
4.47 0.8998
AT2G36870 XTH32 xyloglucan endotransglucosylas... Potri.016G098600
[exp]
4.89 0.9098 XTH32.2
AT1G78960 ATLUP2 lupeol synthase 2 (.1) Potri.009G064950
[exp]
7.21 0.8751
AT4G33670 NAD(P)-linked oxidoreductase s... Potri.009G081300
[exp]
7.48 0.8205
AT5G43250 CCAAT NF-YC13 "nuclear factor Y, subunit C13... Potri.001G055000
[exp]
7.93 0.8886
AT2G29125 RTFL2, DVL13 DEVIL 13, ROTUNDIFOLIA like 2 ... Potri.009G034300
[exp]
9.16 0.8709
Potri.012G031250
[exp]
10.48 0.8854
AT4G39010 ATGH9B18 glycosyl hydrolase 9B18 (.1) Potri.004G162200
[exp]
11.31 0.9138
AT2G37640 ATHEXPALPHA1.9,... ARABIDOPSIS THALIANA EXPANSIN ... Potri.006G086100
[exp]
12.00 0.8603 EXPA3.1,PtEXPA16

Potri.003G076700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.