Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16600 633 / 0 Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G35710 627 / 0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2.3) AT5G18480 121 / 2e-29 PGSIP6 plant glycogenin-like starch initiation protein 6 (.1) AT1G08990 78 / 5e-15 PGSIP5 plant glycogenin-like starch initiation protein 5 (.1) AT1G54940 70 / 2e-12 PGSIP4 plant glycogenin-like starch initiation protein 4 (.1) AT4G33330 65 / 7e-11 PGSIP3, GUX2 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) AT1G77130 62 / 3e-10 PGSIP2, GUX3 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) AT3G18660 61 / 1e-09 PGSIP1, GUX1 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) AT2G47180 51 / 9e-07 ATGOLS1 galactinol synthase 1 (.1) AT1G09350 50 / 1e-06 ATGOLS3 galactinol synthase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G158000 [exp] 812 / 0 AT4G16600 678 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.013G049100 [exp] 114 / 5e-27 AT5G18480 661 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Potri.014G029900 [exp] 67 / 1e-11 AT4G33330 791 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Potri.005G033500 [exp] 67 / 2e-11 AT1G08990 555 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.005G187900 [exp] 66 / 3e-11 AT1G77130 803 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Potri.007G107200 [exp] 64 / 1e-10 AT3G18660 884 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.005G061600 [exp] 64 / 2e-10 AT3G18660 863 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.013G022900 [exp] 62 / 6e-10 AT1G08990 561 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.014G116800 [exp] 58 / 6e-09 AT2G47180 568 / 0.0 galactinol synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004717 [exp] 671 / 0 AT4G16600 673 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10008518 [exp] 632 / 0 AT2G35710 632 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2.3) Lus10027949 [exp] 119 / 5e-29 AT5G18480 635 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Lus10000817 [exp] 96 / 1e-22 AT5G18480 329 / 2e-111 plant glycogenin-like starch initiation protein 6 (.1) Lus10021731 [exp] 69 / 3e-12 AT4G33330 803 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10018922 [exp] 67 / 1e-11 AT1G77130 847 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10028623 [exp] 67 / 1e-11 AT1G77130 830 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10042658 [exp] 67 / 1e-11 AT4G33330 801 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10031507 [exp] 64 / 2e-10 AT1G54940 542 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10033485 [exp] 64 / 2e-10 AT3G18660 677 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G076800.1 pacid=42785275 polypeptide=Potri.003G076800.1.p locus=Potri.003G076800 ID=Potri.003G076800.1.v4.1 annot-version=v4.1 ATGGCTTCTTCTCGAGAGCCTTGGTTAATGTTGAGGTTTCTGTTGCTTTTAGTTCTCGCTGTATATAAAACGACAGCGTTTGGAGTGGTCGTGAAGGCTG GCCAGATAGAGCAGCAGCAACAGCTCCAGCAGGAAGGTCCACCGCAACGGCACAAAAACGCATACGCGACGATGATGTACATGGGGACACCAAGAGACTA CGAGTTCTACGTTGCTATACGGGTCATGCTCAGATCTCTCGCTAAATTACAAGTGGACGCTGATCTCGTCGTCATTGCCTCCCACGATGTTCCTCACCGT TGGGTTCATACCATGGAACAGGAAGATGGTGCAAGGGTAATGAGAGTGGAAAATGTGAACAATCCGTATAAGAACCAACCCAATTTTGATAGGAGATTTC TATTAACATTGAACAAACTCTATGTATGGAAATTGGTGGAATATGAGAGGGTGGTCATGCTTGATGCTGACAATCTTTTCCTCAGAAAACCTGATGAGTT GTTCCAATGTGGACAATTCTGTGCAGTCTTCATCAACCCCTGTATATTCCATACCGGCCTCTTTGTGTTACAGCCATCCATGGAAGTGTTTAACGACATG CTTCATCAGTTGGAAATTGGGAAACATAACCCTGATGGTGCAGACCAAGGTTTTATTAGTAGCTACTTTCCTGACTTGCTTGATATGCCAATGTTCCATC CACCTCTAAATGGCACCACAGTCAACGGGTCTTATAGACTTCCTTTAGGCTACCAAATGGAGGCCACTTATTACTATCTTAGACTCCGCTGGAATGTACC CTGTGGGCCTAACAGCGTGATTACTTTCCCTGGTGCTCTGTGGTTGAAACCATGGTATTGGTGGTCATGGCCTGTTTTGCCATTGGGCATTCAATGGCAT GAACAACGTCGTCAAAATATGGGATACGGAGCGGAGACGACCATGGCACTCATTCAGTGCATAGTTTTCGTAGGAATAATAGCAGTAACACGACTAGCGC GGCCAAATATCTCCAAGCTTTGCTATCGGCGAACAGAAAAGAACATCTCCGCTATACAAGCCGGTCTTAAAATGTTAGCAATATGGTCGATTCTTGCAGC CTATATACTCCCCATCATCATCATTCCTTGCACAATCCATCCATTATTAGGCTGGGGATTGTACTTGCTCGGTTCGTTTGCGCTTTGCACTATAGCGATC AATGCATTTATGCTGCCGACGTTACCAGTTTTGACTCCATGTCTAGGGATATTTGGGGTCCTTTTGGTCATGGCATTTCCTTTATACTCGAATGGCATTA TTAGAGCATTATCTATTTTTGGCTACGCATTCTGTGCTGCACCTTTTCTCTGGGTATCAGTGGTTAAGATCATGGCAAGCCTTCAAGCATCCCTTGAAAG GGAAAATTTCTTCCCTAGATTGGGTGAATCTTCGCCGCCTTCTGGATTCAACAAGTTGTATTAG
AA sequence Show only first row Show all	>Potri.003G076800.1 pacid=42785275 polypeptide=Potri.003G076800.1.p locus=Potri.003G076800 ID=Potri.003G076800.1.v4.1 annot-version=v4.1 MASSREPWLMLRFLLLLVLAVYKTTAFGVVVKAGQIEQQQQLQQEGPPQRHKNAYATMMYMGTPRDYEFYVAIRVMLRSLAKLQVDADLVVIASHDVPHR WVHTMEQEDGARVMRVENVNNPYKNQPNFDRRFLLTLNKLYVWKLVEYERVVMLDADNLFLRKPDELFQCGQFCAVFINPCIFHTGLFVLQPSMEVFNDM LHQLEIGKHNPDGADQGFISSYFPDLLDMPMFHPPLNGTTVNGSYRLPLGYQMEATYYYLRLRWNVPCGPNSVITFPGALWLKPWYWWSWPVLPLGIQWH EQRRQNMGYGAETTMALIQCIVFVGIIAVTRLARPNISKLCYRRTEKNISAIQAGLKMLAIWSILAAYILPIIIIPCTIHPLLGWGLYLLGSFALCTIAI NAFMLPTLPVLTPCLGIFGVLLVMAFPLYSNGIIRALSIFGYAFCAAPFLWVSVVKIMASLQASLERENFFPRLGESSPPSGFNKLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16600			Nucleotide-diphospho-sugar tra...		Potri.003G076800 [exp]	0	1
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Potri.013G023200 [exp]	10.95	0.9201
AT3G21790			UDP-Glycosyltransferase superf...		Potri.016G016300 [exp]	15.26	0.9277
AT3G58750		CSY2	citrate synthase 2 (.1)		Potri.014G141900 [exp]	18.16	0.8916
AT1G02070			unknown protein		Potri.005G158400 [exp]	18.30	0.9163
AT1G32690			unknown protein		Potri.003G092700 [exp]	18.97	0.9181
AT4G25800			Calmodulin-binding protein (.1...		Potri.013G010700 [exp]	26.68	0.9107
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003800 [exp]	33.98	0.9089
AT5G47990		THAD1, THAD, CY...	THALIAN-DIOL DESATURASE, "cyto...		Potri.009G065000 [exp]	34.98	0.9144	CYP705B5
AT1G78310			VQ motif-containing protein (....		Potri.005G162300 [exp]	36.12	0.8850
AT1G64160			Disease resistance-responsive ...		Potri.005G100700 [exp]	49.06	0.8855

Compare expression of checked genes

Potri.003G076800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.