Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47500 554 / 0 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT5G19730 301 / 4e-100 Pectin lyase-like superfamily protein (.1) AT2G36710 294 / 7e-97 Pectin lyase-like superfamily protein (.1) AT5G55590 291 / 4e-96 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT1G05310 277 / 2e-90 Pectin lyase-like superfamily protein (.1) AT2G36700 264 / 4e-86 Pectin lyase-like superfamily protein (.1) AT2G21610 252 / 3e-81 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT5G07420 247 / 4e-79 Pectin lyase-like superfamily protein (.1) AT1G69940 247 / 4e-79 ATPPME1 Pectin lyase-like superfamily protein (.1) AT5G07430 244 / 3e-78 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G068400 [exp] 318 / 1e-106 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 306 / 1e-102 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.006G120100 [exp] 292 / 5e-96 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.001G365700 [exp] 290 / 3e-95 AT5G55590 429 / 1e-149 QUARTET 1, Pectin lyase-like superfamily protein (.1) Potri.016G017700 [exp] 280 / 2e-91 AT1G05310 511 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 272 / 1e-88 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.004G156300 [exp] 257 / 2e-83 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.006G137100 [exp] 248 / 1e-79 AT1G69940 355 / 1e-121 Pectin lyase-like superfamily protein (.1) Potri.012G113533 [exp] 240 / 2e-76 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004720 [exp] 553 / 0 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Lus10012942 [exp] 325 / 3e-109 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 303 / 1e-101 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 303 / 7e-101 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 283 / 5e-93 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10010470 [exp] 282 / 5e-92 AT1G05310 521 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10016605 [exp] 280 / 7e-92 AT5G55590 409 / 3e-142 QUARTET 1, Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 278 / 2e-91 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10027737 [exp] 277 / 3e-90 AT2G36710 427 / 2e-148 Pectin lyase-like superfamily protein (.1) Lus10009997 [exp] 273 / 3e-89 AT5G19730 320 / 1e-107 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Potri.003G076900.2 pacid=42786934 polypeptide=Potri.003G076900.2.p locus=Potri.003G076900 ID=Potri.003G076900.2.v4.1 annot-version=v4.1 ATGGCTTCTCTTGGTTATAGTTTCCTGTTCTTCTATTCTTACTTCATTCTTACTTTGTTTTTATTGCATGCACCATTGTTAGTTACAAGCTCTACTTACA GGTACAAGGTCGAGTCATCTTCAATCAATCGGACTGCCCCTACCAACTCTACCAAGCACCATCACAAGTGGGTTGGACCAGTGGGTTACCGAGTGATCAC CGTGGATGTTAACGGGGCCGGCGAGTTCTTATCGGTCCAAGCTGCTGTTGATGCTGTCCCGGAGAACAATGGGGAGAATGTGATGATACTAATTAGCGCC GGATATTACATTGAAAAGGTAACAGTGCCAGCGAGCAAACCGTACATAACGTTTCAAGGAGAAGGAAGAGACGTGACAATCATCGAATGGCATGATAGAG CAAGCGATCGTGGTGCCAATGGCCAGCAGCTGCGTACATACAGGACTGCTTCTGTTTCTGTTTTTGCTAATTATTTCTCAGCTAGAAACATAAGCTTCAA GAACACAGCACCAGCACCAATGCCAGGAATGAAGGGATGGCAAGCTGCGGCATTTCGCATATCTGGAGATAAGGCTTACTTCGCAGGCTGTGGATTCTAC GGTGCCCAAGATACTCTATGCGACGATGCAGGGAGGCATTACTTCAAGGAGTGCTACATTGAGGGCTCTATAGATTTTATTTTTGGGAATGGCCGCTCCA TGTACAAAGACTGTGAGCTACACTCAATAGCCACCAGATTTGGATCGATTGCAGCCCAAGATAGAAACTCTCCCGACGAGAAAACAGGCTTTGCTTTCCT TAACTGCAGGGTAACAGGCACCGGACCACTGTATGTGGGTCGAGCCATGGGCCAGTACTCAAGGATAGTCTATTCCTACACATATTTTGACAACGTTGTG GCTCACGGTGGCTGGGATGATTGGGACCATGCCAGCAACAAGAATAAGACAGTGTTCTTCGGAGTGTATAAATGCTGGGGGCCAGGAGCTGCAGCAGTAC AGGGTGTTTCATGGGCAAGAGAGCTAGACTATGAATCCGCCCACAAGTTCCTTGCTAAGAGTTTTGTCAACGGAAGGCATTGGATAGCCCCTTCTGATGC TTAG
AA sequence Show only first row Show all	>Potri.003G076900.2 pacid=42786934 polypeptide=Potri.003G076900.2.p locus=Potri.003G076900 ID=Potri.003G076900.2.v4.1 annot-version=v4.1 MASLGYSFLFFYSYFILTLFLLHAPLLVTSSTYRYKVESSSINRTAPTNSTKHHHKWVGPVGYRVITVDVNGAGEFLSVQAAVDAVPENNGENVMILISA GYYIEKVTVPASKPYITFQGEGRDVTIIEWHDRASDRGANGQQLRTYRTASVSVFANYFSARNISFKNTAPAPMPGMKGWQAAAFRISGDKAYFAGCGFY GAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRNSPDEKTGFAFLNCRVTGTGPLYVGRAMGQYSRIVYSYTYFDNVV AHGGWDDWDHASNKNKTVFFGVYKCWGPGAAAVQGVSWARELDYESAHKFLAKSFVNGRHWIAPSDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Potri.003G076900 [exp]	0	1
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Potri.018G009300 [exp]	2.00	0.9427
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Potri.001G254100 [exp]	5.00	0.9590
AT2G42840		PDF1	protodermal factor 1 (.1)		Potri.005G200900 [exp]	6.00	0.9548
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Potri.001G374200 [exp]	6.32	0.9350
AT2G36026	OFP		Ovate family protein (.1)		Potri.006G205400 [exp]	6.48	0.9013
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.016G072900 [exp]	8.00	0.9277
AT5G22430			Pollen Ole e 1 allergen and ex...		Potri.009G019300 [exp]	8.66	0.9442
					Potri.001G259212 [exp]	9.53	0.9294
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Potri.017G112300 [exp]	12.96	0.9398
AT1G78170			unknown protein		Potri.005G165300 [exp]	15.00	0.9427

Compare expression of checked genes

Potri.003G076900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.