Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17550 319 / 6e-111 AtPEX19-2, PEX19-2, PEROXIN19-2 ,PEROXIN 19-2 peroxin 19-2 (.1) AT3G03490 306 / 1e-105 AtPEX19-1, PEX19-1 peroxin 19-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G157900 [exp] 443 / 8e-160 AT5G17550 288 / 7e-99 peroxin 19-2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003813 [exp] 286 / 7e-98 AT3G03490 296 / 5e-102 peroxin 19-1 (.1) Lus10010463 [exp] 268 / 6e-91 AT3G03490 275 / 1e-93 peroxin 19-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04614 [poplar] [flax] Pex19 Pex19 protein family
Representative CDS sequence Show only first row Show all	>Potri.003G077000.1 pacid=42786370 polypeptide=Potri.003G077000.1.p locus=Potri.003G077000 ID=Potri.003G077000.1.v4.1 annot-version=v4.1 ATGGCGGACCAACACGATGACTTAGAACAACTGCTTGACAGTGCTCTTGATGATTTCCAGAATCTCAATCTTGCTCCTGCTTCTCAAAGGAGTGGAGATG GTAATGGAGAGAACAGCAATCAGAAGGAGAAACAGACTTGTCTTCCTTCATTGCCAACTGGGGTTCAAGGGTTGGGAATGGGATTGCCTGACTTAAAAAG CAAGAAAAAAGGCAAGCAAAAGGTTTCTAAAGAATCCCATGTTGAGGAGGCTCTTGATAAGCTTAGAGAACAGACCAGGGAGGCTGTTAAAGGATTGGAG TCTGTCACTGCTGCCTCTAAACCTGATGATTCTAGCCAAGATGCGTTTATGGATGATTGGGTTAAGCAGTTTGAGGAGCTAGCTGGTTCTCAGGACATGG AATCAATCGTGGAGACCATGATGCAACAACTTCTATCCAAGGAGATTCTTCATGAACCCATGAAGGAAATTGGAGAAAGATATCCAAAGTGGTTGGAGGA ACACAAAGCCAGTCTGTCCAAAGAAGACCATGAGCGTTACTCTCATCAATATGAACTCATAAAAGATCTTAATGATGTTTATGAAAATGATCCTAATAAC CATACCAAGATATTTGATCTCATGCAGAAAATGCAAGAATGTGGCCAACCACCGAATGATATTGTCCAAGAGCTTGCTCCCGATATTGATTTTGCTAATC TTGGTCAACTATCTCCAGAAATGCTCGAGTCCCAGGGGAATTGTTGCATAATGTGA
AA sequence Show only first row Show all	>Potri.003G077000.1 pacid=42786370 polypeptide=Potri.003G077000.1.p locus=Potri.003G077000 ID=Potri.003G077000.1.v4.1 annot-version=v4.1 MADQHDDLEQLLDSALDDFQNLNLAPASQRSGDGNGENSNQKEKQTCLPSLPTGVQGLGMGLPDLKSKKKGKQKVSKESHVEEALDKLREQTREAVKGLE SVTAASKPDDSSQDAFMDDWVKQFEELAGSQDMESIVETMMQQLLSKEILHEPMKEIGERYPKWLEEHKASLSKEDHERYSHQYELIKDLNDVYENDPNN HTKIFDLMQKMQECGQPPNDIVQELAPDIDFANLGQLSPEMLESQGNCCIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17550		AtPEX19-2, PEX1...	peroxin 19-2 (.1)		Potri.003G077000 [exp]	0	1
					Potri.010G061000 [exp]	6.00	0.7988
AT1G54150			E3 Ubiquitin ligase family pro...		Potri.003G065500 [exp]	6.16	0.8052
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Potri.002G123600 [exp]	12.44	0.7146
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Potri.014G041300 [exp]	20.34	0.7486
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Potri.003G126900 [exp]	30.46	0.7333
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Potri.014G097300 [exp]	47.28	0.7373
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Potri.008G051200 [exp]	51.61	0.7311
AT1G61250		SC3	secretory carrier 3 (.1.2)		Potri.011G045100 [exp]	53.38	0.7247	PSAM2.2
AT3G09980			Family of unknown function (DU...		Potri.006G115400 [exp]	55.90	0.6793
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Potri.008G213400 [exp]	68.54	0.7018

Compare expression of checked genes

Potri.003G077000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.