Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47490 1033 / 0 RGPR-related (.1) AT5G47480 1013 / 0 RGPR-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G157800 [exp] 1993 / 0 AT5G47490 1114 / 0.0 RGPR-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028946 [exp] 1484 / 0 AT5G47490 1196 / 0.0 RGPR-related (.1) Lus10008520 [exp] 1372 / 0 AT5G47490 1143 / 0.0 RGPR-related (.1) Lus10004721 [exp] 1327 / 0 AT5G47490 1141 / 0.0 RGPR-related (.1) Lus10007471 [exp] 936 / 0 AT5G47490 778 / 0.0 RGPR-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12931 [poplar] [flax] Sec16_C Sec23-binding domain of Sec16 PF12932 [poplar] [flax] Sec16 Vesicle coat trafficking protein Sec16 mid-region
Representative CDS sequence Show only first row Show all	>Potri.003G077100.4 pacid=42786475 polypeptide=Potri.003G077100.4.p locus=Potri.003G077100 ID=Potri.003G077100.4.v4.1 annot-version=v4.1 ATGGCTACGAATCCTCCATTTAATGTGATGGAGGATCAGACGGATGAGGATTTTTTTGATAATTTAGTTGATGATGATGATTTTAGACCCACTAATTCGG ATTCAGCCCCTAAGTTCACTGAGGGAAGCGATTCCGATGAGGCGAAAGCCTTTGCCAATCTCAGTATTGAGGATGCAAAAGGTGGATTCGAAGGGAAGGG TGAAATCAATTCGGGCGATGATGCTGCAGGATTGGATGATGTGAAGGCGGAAGAGAGTAATGCGTTGGAGTCGGTGAATCCGCTGGGCTTGTCTGATGGG TTGGTTGAGTCTAATAATGATGGGATTGGATCTGCGGTTGTGCCTGAGGCTATAGTTAGTCAAAGTAGTGAATCCATGAAATCAGGGGCTAAGGAAGTGG GCTGGGGTTCATTTTATGCAGATTCTGCAGAGAATGGGTTTGGTTCATCCTCTGATTTCTTTAATGATTTTGGAGGCATTTCAGAGGATTTTCCTGTGAA AACAGTTGAAAGTGTTGGTAATTTAGAGAACACAGATGGTGGAGGATTGGATAATTCGGTCTGTTACCAGAAATATCAAGATGGTGCACACGTTTATGCA GGATCGGTGGAGAATGTGAATGAGCAGGACTTGAATAGCAGTCAGCATTGGGAAAACATGTACCCTGGATGGAAGTATGACGCAAACACTGGGCAATGGT ATCAAGTGGATGCTTTTGATGCTACGGCAAGCGTGCAAGGAATTGTTGATGGTGCTTTGGGGGGTGAATGGGCTTCAGCTTCTGCCTCTGATGGGAAAAC AGAGGTTAATTATTTGCAGCAGACTTCACAGTCTGTGGTGGGAACTGTGGCTGAGACTAGTACAACCGAGAGTGTGTCTAGCTGGAATCAGGTTTCCCAA GGGAATAATAATGGTTACCCTGAACACATGGTTTTTGACCCACAATATCCTGGTTGGTATTACGACACAATGGTAGGGGAATGGCGCTCTCTGGAAAGTT CCACATCATCAGCAAAATCAACAACTGTTCAAACTAACGGTCAGCAGAATCAAAATGGATTTGCATTTAGTGATCCTTATTCGCAAAATAGTAGTAGCAC ATATGCTGAGTATGGGCAAGCTGGCAAGTACGGTTCACAAGGCTATAATAGCCAAGGCCAACATGGCAGCTGGGATGAGTCTTATGGTAACAATCAGCAG AATTTGAATATGTGGCAACCTCAGACTACTGCTAAGATAGATGCTGTTTCGAATTTTGGTGGAAACCTGCAATTACATAAATCATATGGTTCAAACTTTT CCATGAACAACCACGTGGATCAGCAGAAAGCTATCAATTCTCTGGGGACGGTTCCATCATATGACAAAGCAAGTCAAAGTAATGCTGAGGCTAATGAGCT TGTTGGGTTGCAAAATTTTGTACCTGGTGGGAGCTTCAGTCAGCAGTATAATCAGGGAACTGTAAAGCAGAATGAACAAGCAAACTTTTCAAATGATTAC AGTTGCAGTCAGGAACAAGTAAGTGTCACCCATCAATCATTTCAGAGTAACCAGCAGTTTTCTTATGCTCCCAACACAGGGAGATCCTCTGCTGGCCGTC CTCCACATGCATTGGTTACTTTTGGATTTGGTGGGAAGCTCATAGTAATGAAAGATGGCAGTTCTCTCAGGAACACATACTTTGGCAACCAGGATCGTGT AGGAGGCTCAATCTCTGTAATGAACTTGGTGGAGGTTTTGTCAGGAAGTAGTGATAATTCTTCGAGTGTTGGAGGGAGCACTAGCTGTTATTTTGATGCT CTCTGCCAACAGTCCTTTCCAGGTCCGTTGGTGGGTGGCAATGTTGGAAATAAAGAGTTGAATAAGTGGATTGATGAGAGGATTGCACACTGTGAATTGC CTGATGTGAATCATAAAAAAGGCAAAGCATTGAGGTTGCTTCTTTCTTTGCTTAAATTAGCTTGTCAACATTATGGAAAACTTCGATCATCTTTTGGAAC TGACAATTTATTAAAGGAGAGCGATGCTCCAGAATCAGCAGTTGCAGAACTTTTTGGATCTGTCAAGAGGAATGGCACCCAATTCAGTGAGTTTGGTGCC CTTGACCACTGCTTGCAGAATGTGCCGTCTGAAGGACAAATTAGGGCAACTGCTTCTGAGGTACAACATCTTCTGGTTTCTGGTAGAAAAAAAGAGGCCC TACAATGTGCACAAGAAGGCCAGTTGTGGGGACCTGCACTTGTTCTTGCATCACAGCTGGGTGATCAGTACTATGTCGATACTGTCAAGCTAATGGCACT TCGCCAGCTGGTTGCTGGATCTCCTTTGCGGACATTATGCTTGCTAATAGCAGGGCAACCAGCTGAGGTATTTTCCACAAATGCTACTGGACATGGTGGC CTTCATGGTGATTTTAGTACACCTCAACAACCTGTACAGCTTGGGACAAATGGAATGCTTGATGATTGGGAAGAGAATTTGGCTGTAATAACTGCAAACA GAACAAAAGATGATGAACTTGTGCTCATACATCTTGGAGATTGCCTATGGAAGGATAGAAGTGAGATTACTGCTGCACACATCTGCTATTTAGTAGCGGA AGCAAACTTTGAGTCGTATTCAGACACTGCAAGGCTATGCCTAATTGGAGCAGATCACTGGAAGCATCCTCGAACATATGCTAGTCCAGAGGCTATTCAG AGAACTGAGTTGTATGAATACTCAAAGGTGCTTGGTAACTCCCAGTTTATCCTGCTGCCATTCCAGCCATATAAGCTCATATATGCATACATGCTGGCTG AAGTGGGCAAAGTCTCTGATTCACTCAAGTATTGTCAGGCTGTTTTAAAATCCCTAAAAACCGGTCGAGCTCCGGAAGTAGAAACATGGAAACAATTAGT ACTGTCCCTTGAGGAAAGATGTAGAGCCCATCAGCAGGGTGGATACACCACAAATTTGGCTCCTGCAAAGTTAGTTGGCAAGTTGCTCAACTTTTTTGAT AGCACTGCACATCGTGTTGTCGGGGGCCTACCACCACCGGTACCATCAGCATCACAAGGAAGTGTGCAAGATAGCCATCACCAACAGGTGGCTCCCAGAG TCTCAGGCAGTCAGTCAACAATGGCCATGTCATCACTAATGCCTTCTGCTTCGATGGAGCCCATAAGTGAATGGGCAGCTGATGGAAATAGAATGACAAT GCATAACAGAAGTGTTTCAGAGCCAGACTTTGGTAGAAGTCCAAGACAGGTTGATTCATCAACAGAAGAAACTTCATCCAGCGCACAAAGCAAGGCATCA GGCCCAGTGGTGTCATCTCGGTTTGGTCGTTTTGGTTTTGGTTCACAACTTTTGCAGAAGACTGTGGGGCTGGTCTTAAGACCTCGGTCAGATAAACAGG CTAAATTAGGTGAAAAGAACAAATTTTATTACGATGAAAAGCTCAAGAGATGGGTGGAGGAAGGTGCTGAACCCCCAGCTGAAGAACCAGCCTTGGCTCC CCCTCCAACAACTCTAGGCTTCCAGAATGGAGGGTCTGACTACAACTTGAAATCCTCATTGAAGAGTGATGTATCTTCAACCGATGGGAGCCCACCGTTT AAGAGTCCCACTCCAATGGACCGTACCTCAGGGATTCCACCTATTCCAATCGGTTCAAATCAATTCTCAGCTTGCGGGCGCATGGGTGTACGAGCAAGGT ATGTTGACACCTTTAACCAAGGGGGTGGAAGCCCAGCAAATCTGTTCCAGTCCCCGTCTGTTCCATCTGTGAAACCTGCTGTTGCTGCAAATGCAAAGTT TTTTGTTCCCACACCTGCACCACCACATGAATATTCTATGGAAGCTATAGCAGAAAACATACAAGAAGACAGTGCAACTACTGAAAACCCTTCAACATCT AATATGAACAAGAATGGCCCTTCACATCCTTCAACATCTTCAGCACTAACTATGCAAAGATTTTCAAGCGTGGATAACATTACAAGGAAGGGGGCTATGA TAAATGGCAATGGCCCTGTTTCATCCCACTCGCGACGAACAGCATCTTGGAGTGGGAGCTTCAGTGATTCATTTAGTCCTCCCAAGGCGGTAGAATCCAA ATCGCAAGGGGAGATGTTGAGCATGTCCCCTTCGTCATTTATGCCTAGCAACCATTCCATGACTCGAATGTCAAGTAGTGGCAGTTTTGGTGATGACCTT CATGAGGTGGAGCTTTGA
AA sequence Show only first row Show all	>Potri.003G077100.4 pacid=42786475 polypeptide=Potri.003G077100.4.p locus=Potri.003G077100 ID=Potri.003G077100.4.v4.1 annot-version=v4.1 MATNPPFNVMEDQTDEDFFDNLVDDDDFRPTNSDSAPKFTEGSDSDEAKAFANLSIEDAKGGFEGKGEINSGDDAAGLDDVKAEESNALESVNPLGLSDG LVESNNDGIGSAVVPEAIVSQSSESMKSGAKEVGWGSFYADSAENGFGSSSDFFNDFGGISEDFPVKTVESVGNLENTDGGGLDNSVCYQKYQDGAHVYA GSVENVNEQDLNSSQHWENMYPGWKYDANTGQWYQVDAFDATASVQGIVDGALGGEWASASASDGKTEVNYLQQTSQSVVGTVAETSTTESVSSWNQVSQ GNNNGYPEHMVFDPQYPGWYYDTMVGEWRSLESSTSSAKSTTVQTNGQQNQNGFAFSDPYSQNSSSTYAEYGQAGKYGSQGYNSQGQHGSWDESYGNNQQ NLNMWQPQTTAKIDAVSNFGGNLQLHKSYGSNFSMNNHVDQQKAINSLGTVPSYDKASQSNAEANELVGLQNFVPGGSFSQQYNQGTVKQNEQANFSNDY SCSQEQVSVTHQSFQSNQQFSYAPNTGRSSAGRPPHALVTFGFGGKLIVMKDGSSLRNTYFGNQDRVGGSISVMNLVEVLSGSSDNSSSVGGSTSCYFDA LCQQSFPGPLVGGNVGNKELNKWIDERIAHCELPDVNHKKGKALRLLLSLLKLACQHYGKLRSSFGTDNLLKESDAPESAVAELFGSVKRNGTQFSEFGA LDHCLQNVPSEGQIRATASEVQHLLVSGRKKEALQCAQEGQLWGPALVLASQLGDQYYVDTVKLMALRQLVAGSPLRTLCLLIAGQPAEVFSTNATGHGG LHGDFSTPQQPVQLGTNGMLDDWEENLAVITANRTKDDELVLIHLGDCLWKDRSEITAAHICYLVAEANFESYSDTARLCLIGADHWKHPRTYASPEAIQ RTELYEYSKVLGNSQFILLPFQPYKLIYAYMLAEVGKVSDSLKYCQAVLKSLKTGRAPEVETWKQLVLSLEERCRAHQQGGYTTNLAPAKLVGKLLNFFD STAHRVVGGLPPPVPSASQGSVQDSHHQQVAPRVSGSQSTMAMSSLMPSASMEPISEWAADGNRMTMHNRSVSEPDFGRSPRQVDSSTEETSSSAQSKAS GPVVSSRFGRFGFGSQLLQKTVGLVLRPRSDKQAKLGEKNKFYYDEKLKRWVEEGAEPPAEEPALAPPPTTLGFQNGGSDYNLKSSLKSDVSSTDGSPPF KSPTPMDRTSGIPPIPIGSNQFSACGRMGVRARYVDTFNQGGGSPANLFQSPSVPSVKPAVAANAKFFVPTPAPPHEYSMEAIAENIQEDSATTENPSTS NMNKNGPSHPSTSSALTMQRFSSVDNITRKGAMINGNGPVSSHSRRTASWSGSFSDSFSPPKAVESKSQGEMLSMSPSSFMPSNHSMTRMSSSGSFGDDL HEVEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47490			RGPR-related (.1)		Potri.003G077100 [exp]	0	1
AT5G16280			Tetratricopeptide repeat (TPR)...		Potri.016G068800 [exp]	1.73	0.8578
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Potri.018G072600 [exp]	2.00	0.8467
AT1G20760			Calcium-binding EF hand family...		Potri.002G008600 [exp]	6.00	0.7876
AT3G33530			Transducin family protein / WD...		Potri.018G128400 [exp]	6.16	0.7580
AT2G46560			transducin family protein / WD...		Potri.002G173300 [exp]	6.32	0.8228
AT1G17500			ATPase E1-E2 type family prote...		Potri.001G197500 [exp]	6.78	0.7449
AT4G01290			unknown protein		Potri.014G089200 [exp]	7.14	0.7692
AT5G07740			actin binding (.1)		Potri.015G061001 [exp]	7.48	0.7914
AT2G45540			WD-40 repeat family protein / ...		Potri.014G072600 [exp]	7.74	0.7864
AT1G15240			Phox-associated domain;Phox-li...		Potri.001G183100 [exp]	7.74	0.7728

Compare expression of checked genes

Potri.003G077100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.