Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60580 151 / 2e-43 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G45120 138 / 3e-38 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G02030 122 / 2e-32 C2H2ZnF C2H2-like zinc finger protein (.1) AT4G16610 90 / 5e-21 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G26610 73 / 5e-14 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G19580 61 / 3e-10 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT5G61470 57 / 5e-09 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G49900 57 / 8e-09 C2H2ZnF C2H2 type zinc finger transcription factor family (.1) AT3G49930 55 / 1e-08 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G37430 54 / 1e-08 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G157700 [exp] 493 / 5e-177 AT3G60580 159 / 2e-46 C2H2-like zinc finger protein (.1) Potri.002G143800 [exp] 223 / 2e-70 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.014G066100 [exp] 223 / 3e-70 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.001G125900 [exp] 109 / 2e-27 AT3G60580 98 / 1e-23 C2H2-like zinc finger protein (.1) Potri.004G205300 [exp] 73 / 2e-14 AT4G35280 236 / 2e-76 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.009G166200 [exp] 68 / 1e-12 AT4G35280 258 / 4e-85 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.002G143600 [exp] 67 / 4e-12 AT1G02040 124 / 1e-31 C2H2-type zinc finger family protein (.1) Potri.014G066200 [exp] 66 / 1e-11 AT1G02040 129 / 1e-33 C2H2-type zinc finger family protein (.1) Potri.014G017300 [exp] 64 / 2e-11 AT1G27730 189 / 4e-60 salt tolerance zinc finger (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028951 [exp] 199 / 2e-61 AT3G60580 117 / 1e-30 C2H2-like zinc finger protein (.1) Lus10008523 [exp] 186 / 1e-56 AT3G60580 107 / 3e-27 C2H2-like zinc finger protein (.1) Lus10004724 [exp] 179 / 7e-54 AT3G60580 108 / 2e-27 C2H2-like zinc finger protein (.1) Lus10007474 [exp] 177 / 1e-52 AT3G60580 99 / 7e-24 C2H2-like zinc finger protein (.1) Lus10015740 [exp] 95 / 1e-21 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10003463 [exp] 93 / 4e-21 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1) Lus10009278 [exp] 79 / 7e-17 AT2G45120 161 / 2e-48 C2H2-like zinc finger protein (.1) Lus10015888 [exp] 73 / 1e-14 AT3G60580 126 / 3e-35 C2H2-like zinc finger protein (.1) Lus10004659 [exp] 71 / 2e-13 AT1G26610 219 / 1e-66 C2H2-like zinc finger protein (.1) Lus10026654 [exp] 70 / 5e-13 AT1G26610 233 / 1e-71 C2H2-like zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF13912 [poplar] [flax] zf-C2H2_6 C2H2-type zinc finger
Representative CDS sequence Show only first row Show all	>Potri.003G077200.2 pacid=42787459 polypeptide=Potri.003G077200.2.p locus=Potri.003G077200 ID=Potri.003G077200.2.v4.1 annot-version=v4.1 ATGGAGAGGCATAAATGCAAGCTCTGTGTTAGAACTTTTCCAAATGGAAGAGCTTTGGGTGGTCACATGAAGGCCCACTTGGCAGCAACTCGGCAGCAAC TCGGCGGGCTTGATCGTAATGAGTCATTTTCATCCTCGTATTCTTCTTCCTCTGGTGAAGAAGAAGTAAAAGAAGAGCAAGAAATCGTCAAGAACAGAGA AATGGTTGAAGAGAAGTCTCTGGCTTATGGATTGAGAGAGAATCCCAAGAAAAGTTTCAGGCTTGCAGATCCTGAGTTCTCTTTTACTGTTGATGCTGGG TCTGTTGTCGTGCAAGATAGGGAGAGTGAGACCGAGTCAAGAAACCCAACTCGAAGACGATCCAAGAGGATCCGTAAATCGTGTGGTTTTGGAGATAATC AGGAGCAGGATATTGATGTCAACAAAGTAGTAGACTTGAAGAATCCGAGTTGGGTCGAGTCATCATCACCAGCTGAGCCAGAACCGGTGAGTTCTGTTTC TGATACCTCCCCTGAAGAAGATGTTGCTAGGTGCCTTATGATGCTGTCAAGAGACGTTTGGATGAGAAATATTGAAGAGGAGTATGAAGAACAAGGCGGT AAAGATGGGGAAAGGTCAGTTGAGATGTTGGAGGAAGCAGAGGAGATCAAAGTCAGCAAGATTCGCGGGAAGTTCAGGTGTGAGAAATGCATGAAGCTGT TTCGATCTTCAAGGGCATTGTCTGGTCATAAGAGGATTTGCTCGTTAAATGCAACAGAAGTAAGAAGATTTGCTGGTAGTGCTGATGCCAATGACAGAAT TTTTGAATGCCCATATTGTTTCAAGGTGTTTGGGTCTGGACAAGCACTAGGTGGACACAAAAGATCACATCTTATAGGCTCTTCAACTAGTATTAGTGGT GTTGTCGAAGCATCTACTAAACTGGAGAACAATTTGATAGATCTTAACTTGCCTGCTCCAGTGGAAGATGATGAATTTAGTGTGGTCTCTGATGCATGA
AA sequence Show only first row Show all	>Potri.003G077200.2 pacid=42787459 polypeptide=Potri.003G077200.2.p locus=Potri.003G077200 ID=Potri.003G077200.2.v4.1 annot-version=v4.1 MERHKCKLCVRTFPNGRALGGHMKAHLAATRQQLGGLDRNESFSSSYSSSSGEEEVKEEQEIVKNREMVEEKSLAYGLRENPKKSFRLADPEFSFTVDAG SVVVQDRESETESRNPTRRRSKRIRKSCGFGDNQEQDIDVNKVVDLKNPSWVESSSPAEPEPVSSVSDTSPEEDVARCLMMLSRDVWMRNIEEEYEEQGG KDGERSVEMLEEAEEIKVSKIRGKFRCEKCMKLFRSSRALSGHKRICSLNATEVRRFAGSADANDRIFECPYCFKVFGSGQALGGHKRSHLIGSSTSISG VVEASTKLENNLIDLNLPAPVEDDEFSVVSDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.003G077200 [exp]	0	1
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Potri.009G027900 [exp]	7.21	0.8782	RAB8.1
AT1G66810	C3HZnF	AtC3H14	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G095100 [exp]	8.12	0.9050
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Potri.016G104400 [exp]	11.66	0.8908
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.003G085200 [exp]	11.83	0.9104	Pt-NPSN11.1
AT4G10840			Tetratricopeptide repeat (TPR)...		Potri.001G087800 [exp]	12.64	0.8838
AT1G66810	C3HZnF	AtC3H14	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.017G119900 [exp]	16.09	0.8845
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.010G013500 [exp]	18.16	0.8980
AT3G45850			P-loop containing nucleoside t...		Potri.009G026000 [exp]	20.61	0.8887
AT5G58300			Leucine-rich repeat protein ki...		Potri.013G158800 [exp]	22.24	0.8831
AT4G27270			Quinone reductase family prote...		Potri.004G028900 [exp]	24.69	0.8809

Compare expression of checked genes

Potri.003G077200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.