Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16650 785 / 0 O-fucosyltransferase family protein (.1) AT4G38390 549 / 0 RHS17 root hair specific 17 (.1) AT1G20550 545 / 0 O-fucosyltransferase family protein (.1) AT1G76270 541 / 0 O-fucosyltransferase family protein (.1) AT1G14970 331 / 2e-106 O-fucosyltransferase family protein (.1) AT2G01480 330 / 7e-106 O-fucosyltransferase family protein (.1) AT1G35510 310 / 4e-98 O-fucosyltransferase family protein (.1) AT1G38065 305 / 2e-97 O-fucosyltransferase family protein (.1) AT2G03280 302 / 2e-96 O-fucosyltransferase family protein (.1.2) AT1G38131 305 / 4e-96 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G157400 [exp] 1024 / 0 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G249900 [exp] 569 / 0 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G183200 [exp] 565 / 0 AT1G76270 713 / 0.0 O-fucosyltransferase family protein (.1) Potri.009G143100 [exp] 558 / 0 AT1G76270 699 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G011100 [exp] 558 / 0 AT1G76270 759 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 333 / 4e-107 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 327 / 8e-105 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 308 / 3e-97 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 305 / 5e-97 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007481 [exp] 858 / 0 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 857 / 0 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10007792 [exp] 847 / 0 AT4G16650 751 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 832 / 0 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10013234 [exp] 563 / 0 AT1G76270 791 / 0.0 O-fucosyltransferase family protein (.1) Lus10030754 [exp] 560 / 0 AT1G76270 787 / 0.0 O-fucosyltransferase family protein (.1) Lus10023948 [exp] 553 / 0 AT1G20550 697 / 0.0 O-fucosyltransferase family protein (.1) Lus10012270 [exp] 546 / 0 AT1G76270 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10014444 [exp] 518 / 3e-179 AT1G20550 650 / 0.0 O-fucosyltransferase family protein (.1) Lus10013460 [exp] 335 / 3e-108 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.003G077500.1 pacid=42786853 polypeptide=Potri.003G077500.1.p locus=Potri.003G077500 ID=Potri.003G077500.1.v4.1 annot-version=v4.1 ATGGGAGTGGCTAACAAGGCTTGGATGCTTAGCTTGTTATCGGAAAAACCGAACCTGGCGCTTTATAACCAATCAAACGGAAAACATTATCAATATCATC AAAATATTTATAATGACTGGCGGTGGTGGAGATCTTCGGCGACCCAGCAGCACCGGAGGAAGGTGCCGTGGTCGCTTGTTTGCGGTTTGATGCTGTTTGG TTTGGGATTGGTTTCTCTCTTCACTGGACACGTGGCTTCTGATCTTGAGTGGTACTCTCAACGATTAGTCAAGCGCAGCCTCTTCTACTCTAGGCTGGAG GGAAGGCGACGTGAAGCAATTGATATTTGGAAATCAAAATACTCGAATCTCTTCTATGGATGTAGCGAAAGAGGGCGTAATTTTCCTCCTGCCGTACGTG AGCGGGCATCAAATGGCTATTTGCTTATTGCTGCAAGCGGAGGGTTGAACCAACAAAGAACTGGAATAACAGATGCTGTGGTTGTTGCACGGATTCTTAA TGCTACATTAGTTGTGCCTGAGCTAGATCATCACTCCTATTGGAAGGATGATAGTGACTTTGTCAACATTTTTGACGTTGATTGGTTCATTTCTTACCTT GCAAAAGATGTCACCATTGTGAAAAGAGTTCCTGACAAAGTCATGAGGTCAATGGAAAAACCCCCATATACCATGCGTGTCCCAAGAAAATCCCCCCCTG AGTATTATCTGGATCAAGTTCTGCCAATATTATTAAGGAGACGTGTTGTGCAGTTGACGAAGTTTGACTATAGGCTTGCAAGTAACCTTGACGAAGAGCT GCAAAAGTTGCGCTGCCGGGCTAATTATCATGCTTTAAGATTTACAAAACCCATACAAGAAATTGGAGAGAGACTCGTGACAAAAATGCGAAAGATGGCA AAACGTTACATTGCAATTCACTTGAGGTTTGAACCTGATATGCTTGCGTTTTCTGGGTGTTACTTTGGTGGGGGTGAAAAGGAGAGATTTGAGCTTGGTG AAATAAGAAAAAGATGGGCAACATTACCTGATTTAAGCCCTGATGGAGAGCGTGAGAGAGGAAAATGTCCACTCACTCCTCATGAAGTAGGATTAATGCT GCGTGCCCTTGGTTTTGCTAACGACACATACCTCTATGTTGCATCTGGAGAAATATATGGCGGGGAAGAGACTTTGAGACCCCTTAGAGAACTCTTCCCA AACTTCTATACGAAGGAGATGCTTGCAATCGAAGAGCTGAAATCTTTTTTTCCATTTTCCTCTCGCATGGCAGCCATTGACTACATTGTCTGTGATGAGA GTGATGTCTTTGTCACAAATAACAATGGAAACATGGCCAAGATTCTTGCTGGTCGAAGGAGATATGCTGGGCATAAGAGGACCATCAGACCGAATGCAAA GAAGCTCAGTGCATTGTTCAAGGCAAGGGATCGGATGGACTGGGATACATTTGCCAAAAAGGTGAAAGCAAGCCAGAGAGGATTTATGGGAGAACCCGAT GAGGTGAGGCCTGGACGAGGTGACTTTCATGAATATCCATCTTGTATCTGTGAGAAGCCATTTACGGATGATGAAAACAGAAAGGGCGAAGATCTACTGT CAGATAGAATTCATATGAACTTGAAGGAAAATGTTGATTCCAAGTATGTTGGGGAGAATCAAGGTGACAAAAGCCTCCAGAGATTGAAGAAGAGAAGCAT AGAAGAACCAATATCTTTAAGAGAGAACAAGGACGGTGAAAATTTTCCTGACTAA
AA sequence Show only first row Show all	>Potri.003G077500.1 pacid=42786853 polypeptide=Potri.003G077500.1.p locus=Potri.003G077500 ID=Potri.003G077500.1.v4.1 annot-version=v4.1 MGVANKAWMLSLLSEKPNLALYNQSNGKHYQYHQNIYNDWRWWRSSATQQHRRKVPWSLVCGLMLFGLGLVSLFTGHVASDLEWYSQRLVKRSLFYSRLE GRRREAIDIWKSKYSNLFYGCSERGRNFPPAVRERASNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKDDSDFVNIFDVDWFISYL AKDVTIVKRVPDKVMRSMEKPPYTMRVPRKSPPEYYLDQVLPILLRRRVVQLTKFDYRLASNLDEELQKLRCRANYHALRFTKPIQEIGERLVTKMRKMA KRYIAIHLRFEPDMLAFSGCYFGGGEKERFELGEIRKRWATLPDLSPDGERERGKCPLTPHEVGLMLRALGFANDTYLYVASGEIYGGEETLRPLRELFP NFYTKEMLAIEELKSFFPFSSRMAAIDYIVCDESDVFVTNNNGNMAKILAGRRRYAGHKRTIRPNAKKLSALFKARDRMDWDTFAKKVKASQRGFMGEPD EVRPGRGDFHEYPSCICEKPFTDDENRKGEDLLSDRIHMNLKENVDSKYVGENQGDKSLQRLKKRSIEEPISLRENKDGENFPD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16650			O-fucosyltransferase family pr...		Potri.003G077500 [exp]	0	1
AT2G20110	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.018G039300 [exp]	2.64	0.7759
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Potri.019G103900 [exp]	4.00	0.8177
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Potri.001G200400 [exp]	8.60	0.7963	BGAL1.1
AT5G49110			unknown protein		Potri.010G011800 [exp]	10.39	0.7956
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Potri.012G016000 [exp]	10.95	0.7521
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Potri.017G069600 [exp]	11.83	0.7778
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Potri.011G045600 [exp]	16.49	0.7398
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Potri.010G102900 [exp]	17.43	0.7592	CRE1.1
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.007G026700 [exp]	19.07	0.7444	CHR904,SOM1.2
AT1G16970		KU70, ATKU70	ARABIDOPSIS THALIANA KU70 HOMO...		Potri.011G107400 [exp]	25.82	0.7428	Pt-KU70.1

Compare expression of checked genes

Potri.003G077500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.