Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17350 356 / 4e-121 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT5G47440 325 / 6e-109 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G16670 266 / 1e-85 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT3G22810 131 / 7e-34 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT5G43870 127 / 1e-32 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G14740 124 / 5e-32 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region AT3G63300 114 / 2e-28 FKD1 FORKED 1 (.1.2) AT4G32785 101 / 7e-26 unknown protein AT4G32780 43 / 0.0002 phosphoinositide binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G156700 [exp] 532 / 0 AT4G17350 348 / 8e-118 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.010G082400 [exp] 131 / 5e-34 AT4G14740 468 / 1e-162 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Potri.018G042000 [exp] 129 / 3e-33 AT4G32785 159 / 1e-47 unknown protein Potri.005G213800 [exp] 126 / 3e-32 AT3G63300 388 / 7e-131 FORKED 1 (.1.2) Potri.002G049200 [exp] 126 / 5e-32 AT3G63300 418 / 1e-142 FORKED 1 (.1.2) Potri.008G157000 [exp] 124 / 2e-31 AT3G22810 430 / 9e-148 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004734 [exp] 333 / 1e-111 AT4G17350 389 / 2e-133 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10007797 [exp] 160 / 4e-46 AT4G16670 203 / 1e-62 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10009509 [exp] 134 / 8e-37 AT3G22810 180 / 2e-55 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10014703 [exp] 119 / 3e-31 AT3G22810 297 / 2e-99 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10039370 [exp] 98 / 9e-23 AT4G14740 219 / 2e-69 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10006614 [exp] 97 / 7e-22 AT4G14740 504 / 5e-177 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10041187 [exp] 87 / 2e-18 AT4G14740 315 / 1e-103 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10021903 [exp] 68 / 1e-12 AT5G43870 159 / 8e-47 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10004079 [exp] 50 / 1e-06 AT3G63300 167 / 2e-47 FORKED 1 (.1.2) Lus10009508 [exp] 46 / 9e-06 AT4G32780 71 / 4e-15 phosphoinositide binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05703 [poplar] [flax] Auxin_canalis Auxin canalisation CL0266 [poplar] [flax] PH PF08458 [poplar] [flax] PH_2 Plant pleckstrin homology-like region
Representative CDS sequence Show only first row Show all	>Potri.003G077900.1 pacid=42785656 polypeptide=Potri.003G077900.1.p locus=Potri.003G077900 ID=Potri.003G077900.1.v4.1 annot-version=v4.1 ATGGAAAGTGGACTTTATTCTGCTTTTAAGAGTACTTCGATGCTAGAATATTTAGAGGAGGACCAAGAGCTGAAACCTGCATCTTCACTGCCAGCGATTC CTCAACCACAGACACCAAGAGAGCCTATGGAGTTCTTATCAAGATCCTGGAGTCTCTCTGCTTCAGAAATCTCAAAAGCTCTGGCTCAGAAGCAGAAAGA GTTTTTCACTGAAAAGAACCCCGATACATTTCCAGAGACAATTGTGGCACAACAATCATCAGGGAAGGTGGTAAATTCAAAAGGAGGTTCAAGGACAGGA TCAATAGGAAAATGGTTCCACCACAAGGAATTCAGTAGCAGTGCAGTGAAGAAGAAAGACAAAGCACGCACGGAAAATGCGCATATGCATTCTGCTGTAT CTATAGCCGGACTAGCTGCGGCATTGGCTGCCGTGACAGCTGCCGGAAATTCCAGTGGTTCCAGCTCCAAAATGAGCATGGCTTTGGCCTCAGCTGCAGA ACTCCTTGCATCACATTGCATAGAATTATCAGAATCAGCCGGAGCTGATCATGATTGTGTGGCTTCTGTTGTGAGATCAGCAGTAGATATTCAAAGTCCA GGTGATCTAATGACCCTTACCGCCGCCGCGGCAACAGCTTTGAGAGGAGAAGCAGCTTTAAAATCAAGATTACCAAAAGAAGCAAGAAGGAATGCTGCTA TAAGTCCTTATGATAGGGGGGTGGCGGATACTCACTGGACTTCTTCTTCAAATGGTCCATTAGAAGAACAGGGTCCTCCCTGTGTTGGTGAACTCTTGCA ACACACAAAGAAAGGAGTGATGCGATGGAAACATGTCACCGTGTACATCAACAAGAAATCCCAGGTCCTAATTAAGATCAAAAGCAAACACGTTGGAGGA GCCTTGTCCAAGAAGCAAAAAGGTGTTGTTTATGGAGTCTGTGATGAGACAACAGCATGGCCATATAGAAAAGAAAGGGAAACTGGTACTGAGGAAGTCT ATTTCGGCATTAAAACAGCACAAGGTCTACTGGAGTTCAAGTGCAAGAACAAAATTCACAAGCAGAGGTGGGTTGATGGTATACAGAGTCTTCTTCGACA AGTCAGCAGTGTTGAAGAAACTGACCACTCCCTGACATGTTTAAGCATAAACGATGGTGCCTAG
AA sequence Show only first row Show all	>Potri.003G077900.1 pacid=42785656 polypeptide=Potri.003G077900.1.p locus=Potri.003G077900 ID=Potri.003G077900.1.v4.1 annot-version=v4.1 MESGLYSAFKSTSMLEYLEEDQELKPASSLPAIPQPQTPREPMEFLSRSWSLSASEISKALAQKQKEFFTEKNPDTFPETIVAQQSSGKVVNSKGGSRTG SIGKWFHHKEFSSSAVKKKDKARTENAHMHSAVSIAGLAAALAAVTAAGNSSGSSSKMSMALASAAELLASHCIELSESAGADHDCVASVVRSAVDIQSP GDLMTLTAAAATALRGEAALKSRLPKEARRNAAISPYDRGVADTHWTSSSNGPLEEQGPPCVGELLQHTKKGVMRWKHVTVYINKKSQVLIKIKSKHVGG ALSKKQKGVVYGVCDETTAWPYRKERETGTEEVYFGIKTAQGLLEFKCKNKIHKQRWVDGIQSLLRQVSSVEETDHSLTCLSINDGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17350			Plant protein of unknown funct...		Potri.003G077900 [exp]	0	1
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Potri.009G057900 [exp]	6.32	0.8368
AT3G14470			NB-ARC domain-containing disea...		Potri.003G015500 [exp]	6.70	0.8263
AT3G10300			Calcium-binding EF-hand family...		Potri.016G043600 [exp]	10.95	0.8328
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145530 [exp]	13.19	0.8364
AT5G64880			unknown protein		Potri.005G083900 [exp]	14.28	0.8213
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Potri.015G126900 [exp]	15.00	0.8036	Pt-ATTPPA.2
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Potri.002G176900 [exp]	15.81	0.8323
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Potri.014G115600 [exp]	19.79	0.7856
AT1G50460		ATHKL1, HKL1	hexokinase-like 1 (.1)		Potri.001G254800 [exp]	21.16	0.8291
AT4G03460			Ankyrin repeat family protein ...		Potri.019G106000 [exp]	32.24	0.7385

Compare expression of checked genes

Potri.003G077900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.