Plant FIBer expression Database

Potri.003G078000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G47435 484 / 5e-174 formyltetrahydrofolate deformylase, putative (.1.2)
AT4G17360 482 / 5e-173 Formyl transferase (.1)
AT1G31220 79 / 1e-16 Formyl transferase (.1)
AT1G66520 59 / 1e-09 PDE194 pigment defective 194, formyltransferase, putative (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G156600
[exp]
587 / 0 AT5G47435 476 / 2e-170 formyltetrahydrofolate deformylase, putative (.1.2)
Potri.012G107500
[exp]
70 / 2e-13 AT1G31220 337 / 1e-116 Formyl transferase (.1)
Potri.017G123300
[exp]
59 / 2e-09 AT1G66520 516 / 0.0 pigment defective 194, formyltransferase, putative (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028958
[exp]
527 / 0 AT5G47435 498 / 3e-179 formyltetrahydrofolate deformylase, putative (.1.2)
Lus10007482
[exp]
96 / 3e-25 AT4G17360 99 / 7e-27 Formyl transferase (.1)
Lus10040974
[exp]
67 / 2e-12 AT1G31220 327 / 3e-112 Formyl transferase (.1)
Lus10013428
[exp]
67 / 3e-12 AT1G31220 326 / 4e-112 Formyl transferase (.1)
Lus10000450
[exp]
59 / 2e-09 AT1G66520 510 / 0.0 pigment defective 194, formyltransferase, putative (.1)
Lus10010978
[exp]
56 / 1e-08 AT1G66520 496 / 2e-177 pigment defective 194, formyltransferase, putative (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00551 Formyl_trans_N Formyl transferase
Representative CDS sequence
>Potri.003G078000.1 pacid=42787257 polypeptide=Potri.003G078000.1.p locus=Potri.003G078000 ID=Potri.003G078000.1.v4.1 annot-version=v4.1
ATGAATCTGACACAAAGAAGAGTGAGTTCAAGAATCCCTCAAGTATTTGGATTCGGAAGGTCCTTCAAGTCGTCCCTCGATCCCTCCTCTATTACCCACG
GCATCCACGTTTTCCAATGCCCTGACGCTGTTGGTATTGTTGCGAAGCTCTCGGAGTGTATTGCTTCCAGAGGTGGAAACATTCTCGGTGCTGATATTTT
CGTCCCTCAAAACAAGAATGTCTTCTACTCTAGAAGTGAGTTTATTTTTGACCCCGTTAAATGGCCGCGTGTGCAAATGGATGAGGACTTTCTCAGAATT
TCAAAAATGTTCGATGCAACAAGGTCTGTTGTCCGGGTGCCTAAGCTGGACCCCAAATTCAAGATTGCTGTTATTGCTTCAAAGCAGGAGCATTGCCTGA
TTGATTTGTTACACTCATGGCAGGATGGAAGGCTTCCGGTTGATATCACTCGTGTAATAAGTAATCATGATAGAGGCCCAGACACGCATGTGATTCGGTT
TCTTGAACGGAATGGCATTCCTTATCATTATTTACACACAACTAAAGAGAATAAAAGAGAAGAGGAGATCCTGGATTTGGTTCAGAATACTGATTTTTTA
GTTCTTGCCAGGTACATGCAGATATTATCTGGTAAATTTCTGCAGAGCTATGGAAAAGATATAATTAACATTCACCATGGTCTTTTGCCATCATTTAAGG
GTGGGAATCCGTCAAAGCAGGCTTTTGATGCTGGTGTGAAATTAATCGGTGCTACGAGTCACTTTGTTACTGAAGAACTTGATGCAGGGCCTATCATTGA
ACAGATGGTTGAGAGAGTTTCTCATAGAGATAATATCCAGAGTTTTGTGCGGAAATCAGAGAACCTTGAGAAACAATGCATTGCAAAAGCTATAAAATCT
TACTGTGAATTGCGTGTTTTGCCTTATGAGGAAAACAAGACTGTTGTATTCTGA
AA sequence
>Potri.003G078000.1 pacid=42787257 polypeptide=Potri.003G078000.1.p locus=Potri.003G078000 ID=Potri.003G078000.1.v4.1 annot-version=v4.1
MNLTQRRVSSRIPQVFGFGRSFKSSLDPSSITHGIHVFQCPDAVGIVAKLSECIASRGGNILGADIFVPQNKNVFYSRSEFIFDPVKWPRVQMDEDFLRI
SKMFDATRSVVRVPKLDPKFKIAVIASKQEHCLIDLLHSWQDGRLPVDITRVISNHDRGPDTHVIRFLERNGIPYHYLHTTKENKREEEILDLVQNTDFL
VLARYMQILSGKFLQSYGKDIINIHHGLLPSFKGGNPSKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNIQSFVRKSENLEKQCIAKAIKS
YCELRVLPYEENKTVVF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G47435 formyltetrahydrofolate deformy... Potri.003G078000
[exp]
0 1
AT2G43540 unknown protein Potri.007G134400
[exp]
1.41 0.9037
AT3G14770 SWEET2, AtSWEET... Nodulin MtN3 family protein (.... Potri.001G383000
[exp]
6.16 0.8495
Potri.013G028950
[exp]
12.00 0.8847
AT1G73500 ATMKK9 MAP kinase kinase 9 (.1) Potri.012G043200
[exp]
16.58 0.8718 MKK9.1
AT2G39080 EMB2799 EMBRYO DEFECTIVE 2799, NAD(P)-... Potri.008G204700
[exp]
17.26 0.8861
AT1G75730 unknown protein Potri.002G022800
[exp]
21.09 0.8270
AT2G32170 S-adenosyl-L-methionine-depend... Potri.016G021900
[exp]
27.71 0.8620
AT1G20830 MCD1 multiple chloroplast division ... Potri.005G255300
[exp]
31.30 0.8590
AT5G20670 Protein of unknown function (D... Potri.006G140600
[exp]
42.21 0.8567
AT1G62600 Flavin-binding monooxygenase f... Potri.001G121100
[exp]
43.04 0.8229

Potri.003G078000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.