Plant FIBer expression Database

Potri.003G078100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16695 88 / 2e-25 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G156500
[exp]
96 / 2e-28 AT4G16695 83 / 2e-23 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028968
[exp]
93 / 2e-27 AT4G16695 86 / 1e-24 unknown protein
Lus10007491
[exp]
93 / 2e-27 AT4G16695 86 / 1e-24 unknown protein
PFAM info
Representative CDS sequence
>Potri.003G078100.2 pacid=42786285 polypeptide=Potri.003G078100.2.p locus=Potri.003G078100 ID=Potri.003G078100.2.v4.1 annot-version=v4.1
ATGCCTTACTGGAGAGTCATGGAGGTGGAGCCACCAAGTCCGTTAAGATACCTAATCGGCGCAGCATTAATGATGATTGGAGTGGTGTTACCCGTTGGTT
ACATGATGTTTCGTAACAAGCGGGGTCCTTCTTCTTCCTCTTACTCCAAACAGACGGCAAAGTTTTGA
AA sequence
>Potri.003G078100.2 pacid=42786285 polypeptide=Potri.003G078100.2.p locus=Potri.003G078100 ID=Potri.003G078100.2.v4.1 annot-version=v4.1
MPYWRVMEVEPPSPLRYLIGAALMMIGVVLPVGYMMFRNKRGPSSSSYSKQTAKF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G16695 unknown protein Potri.003G078100
[exp]
0 1
AT3G09735 S1FA-like DNA-binding protein ... Potri.016G087400
[exp]
3.46 0.6863 Pt-S1FA3.2
AT5G41700 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN... Potri.019G131400
[exp]
5.29 0.6543 UBC.10
AT1G50640 AP2_ERF ATERF3 ethylene responsive element bi... Potri.001G356100
[exp]
5.47 0.6605 Pt-ERF3.1,ERF40
AT5G02500 AtHsp70-1, AT-H... HEAT SHOCK PROTEIN 70-1, ARABI... Potri.010G205800
[exp]
7.41 0.6372
AT4G13270 Late embryogenesis abundant (L... Potri.006G159400
[exp]
10.00 0.6994
AT5G35080 unknown protein Potri.006G061600
[exp]
15.87 0.6320
AT2G47590 PHR2 photolyase/blue-light receptor... Potri.014G128500
[exp]
16.52 0.5830
AT5G08750 RING/FYVE/PHD zinc finger supe... Potri.005G070100
[exp]
18.38 0.6045
AT5G11730 Core-2/I-branching beta-1,6-N-... Potri.006G233400
[exp]
19.59 0.6054
AT1G32790 CID11 CTC-interacting domain 11 (.1.... Potri.015G005400
[exp]
22.97 0.5772

Potri.003G078100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.