Plant FIBer expression Database

Potri.003G078300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16700 566 / 0 PSD1 phosphatidylserine decarboxylase 1 (.1)
AT4G25970 57 / 2e-08 PSD3, PSD2 phosphatidylserine decarboxylase 3 (.1)
AT5G57190 50 / 3e-06 PSD2 phosphatidylserine decarboxylase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G061700
[exp]
62 / 4e-10 AT5G57190 956 / 0.0 phosphatidylserine decarboxylase 2 (.1)
Potri.001G172400
[exp]
49 / 8e-06 AT4G25970 966 / 0.0 phosphatidylserine decarboxylase 3 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007807
[exp]
569 / 0 AT4G16700 515 / 0.0 phosphatidylserine decarboxylase 1 (.1)
Lus10015839
[exp]
54 / 1e-07 AT4G25970 381 / 4e-130 phosphatidylserine decarboxylase 3 (.1)
Lus10009324
[exp]
52 / 1e-06 AT5G57190 891 / 0.0 phosphatidylserine decarboxylase 2 (.1)
Lus10010761
[exp]
46 / 5e-05 AT5G57190 838 / 0.0 phosphatidylserine decarboxylase 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02666 PS_Dcarbxylase Phosphatidylserine decarboxylase
Representative CDS sequence
>Potri.003G078300.3 pacid=42787434 polypeptide=Potri.003G078300.3.p locus=Potri.003G078300 ID=Potri.003G078300.3.v4.1 annot-version=v4.1
ATGCGCGGATACAAAAGAAAACCCACTTCCTTTCGAGGTCAAAACAGTAAAACGGTGCACCACCTGTCGTTTAACCATCCATCATCAAACCATCAGCTTC
ACTGTGAGCTTCCACAAAACCCTAACCAGAACAACCATCCCTGCCAACAAAAGAATTCAACAACAATGAAATTCCGGTATTCCAACAAACTCCCTATTTT
TGCTCACTCTTTACGTCTGAGCCACCAACACCATCAGCGACGCCAGTTCTTCACTTCGCTTCTCAAAAGGGTCCAAACAGCATCTCAAGTACGTGCTTCT
TTCAATGGAAGCAGTGGAAATCCCCGAGGTAATATATTTCTGGTACCTGGTGCAACCGTGGCCACTTTACTCATGCTCGGTGCTCTTCATGCTCGTCGGC
TTTATGATGATAAGAAGGTCGAAGAGGCGCGGGAGAAAGGAATTGAGTTTGAGTTCCAACCTGATCATAAAGCGTCATTTCTGAGGATGTTACCTTTACG
CTCCATTTCTAGACTTTTCGGTTCCTTGACAAGTGTGGAACTTCCTGTTTGGATGCGTCCACATGTTTATAGAGCATGGGCTCGTGCATTCCATTCAAAC
TTAGAAGAAGTAGCTCTGCCTCTTGAAAACTATGCTTCTTTACGGGAATTCTTTGTTCGGACCTTGAAAGAAGGTTCCAGGCCCATCGACCCTGACCCAC
ATTGTCTGGTTAGTCCTGTGGATGGTACTGTTCTAAGATTTGGAGAGTTGAAAGGCTCAGGGACTATGATTGAGCAAGTCAAAGGTTTTTCTTATTCTGT
TTCTTCTCTTCTTGGTGCTAGCTCCTTGCTTCCCGTGATAACTGAAGGGGATATGCACAAGGAGAGTAGTGAACAGCAAGGAAATCTCAAAGAGAAGAAC
AAGAAGTCATGGTGGAGATTTTCATTGGCTTCTCCTAAAATCAGAGACACTGTGTCAGCATGTCCAGCAAAAGGTCTCTACTACTGTGTAATATACTTGA
GTCCTGGAGACTATCATCTGATACACTCACCTGCTGATTGGAATGTTCTTGTCCGCCGGCATTTTTCAGGGCATCTATTTCCTGTGAATGAACGAGCTAC
AAGAACCATCAGAAATCTTTATGTTCAGAATGAAAGGGTTGTGCTTGAAGGTTTGTGGGAAGGAGGATTCATGGCTATTGCTGCAATTGGTGCTACAAAT
ATTGGGTCAATTAAGCTTTTCATTGAACCAGAACTTCAAACAAACCAGCGAAGGCAAAAGATACTGAATTCAGAACCTCCAGATGAACGAGTATATGCAC
TTGAAGGGGTTGGTAAAAGTCTCAAGAAAGGGGCTGAGGTGGCTGCTTTCAACTTGGGATCGACAGTGGTGCTCGTGTTCCAGGCCCCCACATTAAAAAT
GCTACAAAACAGGGATTCATCTTCGGAGTTTAGGTTCAGTATCAGACGTGGAGATAGAGTGCGTGTTGGGGAAGCTTTGGGGAGGTGGCATGACTTGTAA
AA sequence
>Potri.003G078300.3 pacid=42787434 polypeptide=Potri.003G078300.3.p locus=Potri.003G078300 ID=Potri.003G078300.3.v4.1 annot-version=v4.1
MRGYKRKPTSFRGQNSKTVHHLSFNHPSSNHQLHCELPQNPNQNNHPCQQKNSTTMKFRYSNKLPIFAHSLRLSHQHHQRRQFFTSLLKRVQTASQVRAS
FNGSSGNPRGNIFLVPGATVATLLMLGALHARRLYDDKKVEEAREKGIEFEFQPDHKASFLRMLPLRSISRLFGSLTSVELPVWMRPHVYRAWARAFHSN
LEEVALPLENYASLREFFVRTLKEGSRPIDPDPHCLVSPVDGTVLRFGELKGSGTMIEQVKGFSYSVSSLLGASSLLPVITEGDMHKESSEQQGNLKEKN
KKSWWRFSLASPKIRDTVSACPAKGLYYCVIYLSPGDYHLIHSPADWNVLVRRHFSGHLFPVNERATRTIRNLYVQNERVVLEGLWEGGFMAIAAIGATN
IGSIKLFIEPELQTNQRRQKILNSEPPDERVYALEGVGKSLKKGAEVAAFNLGSTVVLVFQAPTLKMLQNRDSSSEFRFSIRRGDRVRVGEALGRWHDL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G16700 PSD1 phosphatidylserine decarboxyla... Potri.003G078300
[exp]
0 1
AT3G14205 Phosphoinositide phosphatase f... Potri.001G163900
[exp]
1.00 0.8367
AT1G16670 Protein kinase superfamily pro... Potri.001G393200
[exp]
4.00 0.7828
AT5G50340 ATP-dependent peptidases;nucle... Potri.001G191200
[exp]
8.48 0.7411
AT3G24560 RSY3 RASPBERRY 3, Adenine nucleotid... Potri.018G081500
[exp]
10.39 0.7633
AT1G56190 Phosphoglycerate kinase family... Potri.016G091800
[exp]
14.07 0.7499
Potri.018G020301
[exp]
16.61 0.7290
AT5G36930 Disease resistance protein (TI... Potri.019G001600
[exp]
18.43 0.7576
AT4G21540 SPHK1 sphingosine kinase 1 (.1.2.3) Potri.011G043500
[exp]
18.70 0.7012
AT3G12670 EMB2742 embryo defective 2742, CTP syn... Potri.008G080100
[exp]
20.85 0.7253
AT4G03080 BSL1 BRI1 suppressor 1 (BSU1)-like ... Potri.002G213300
[exp]
22.22 0.7088 Pt-PP1.5

Potri.003G078300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.