Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17370 605 / 0 Oxidoreductase family protein (.1) AT1G66130 44 / 0.0001 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007490 [exp] 641 / 0 AT4G17370 590 / 0.0 Oxidoreductase family protein (.1) Lus10028967 [exp] 627 / 0 AT4G17370 576 / 0.0 Oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01408 [poplar] [flax] GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold CL0139 [poplar] [flax] GADPH_aa-bio_dh PF02894 [poplar] [flax] GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta domain
Representative CDS sequence Show only first row Show all	>Potri.003G078500.3 pacid=42786908 polypeptide=Potri.003G078500.3.p locus=Potri.003G078500 ID=Potri.003G078500.3.v4.1 annot-version=v4.1 ATGGCTTCAGTCGAGAATGATGATGGTACAGTGAAGTACGGAATCGTAGGAGTGGGAATGATGGGGAGAGAACACCTCATCAATCTCTACCATCTTCGCA GTCAAAACGTCGGCGTTGTTGCCATAGCTGATCCTCATGTTCCCTCCCAACAACTAGCTGTTGAATTAGCCCAATCATTTGGTTGGCATCTCGAGGTATT TTCAGGGCACCGAGAGTTACTGGACAGCGGACTTTGTGATGTGGTGGTTGTGTCCAGTCCAAACATGACTCATTATCGAATCCTCATGGACATTATTAGC CACCCAAAACCCCATCATGTTCTAGTGGAGAAGCCGTTGTGCACCACTGTTGCTGACTGCAAGAAGGTAGTTGATGCTGCTAGAAGGAGGACAGACATGC TCGTGCAGGTTGGACTGGAGTATAGATACATGCCACCGGTTGCTAAATTGATTGAAGTTGTAAGGGGTGGAGCTGTTGGGCAAGTGAAAATGGTGGCAAT CAGGGAACATCGGTTTCCTTTCCTGGTTAAGGTTGACAATTGGAACCGGTTCAATGCTAACACAGGGGGTACTCTGGTGGAGAAGTGCTGCCATTTCTTT GATTTAATGAAGCTGTTCGCGGGTGCGAATCCTGTTCGAGTTATGGCTTCTGGAGCTATAGATGTTAATCACAAGGATGAAGTATATGATGGGAAGGTAC CAGATATCATTGACAATGCATATGTTATTGTTGAGTTTGACAATGGTTCCCGAGGGATGCTTGACCTTTGCATGTTTGCTGAAGGCAGTAAAAATGAGCA AGAAATATCTGTTGTTGGTGATATAGGAAAGGGGGAGGCCTTTGTCCCAGAGAGTTTAGTGCGTTTTGGTACTCGCGTGGCAGGAAGGGATGGTGTACAA ACATTGAAAGCCGAGGATCGCCGAATTAAATATGATGGACTGCATCATGGATCCAGCTATTTGGAACACCTTACCTTCTTGTCTGCAGTTCGAGCAAAAG GTGAAAAAGCTCCTGCGGTGGATTTGCAAGATGGGTTGATTTCAGTTGCTATTGGAGTTGCAGCACAGCTTTCCATTGAGAAGGGCCAATTTGTCACAAT TCAGGAAGTCATGGGTGAACATTATGGCTAA
AA sequence Show only first row Show all	>Potri.003G078500.3 pacid=42786908 polypeptide=Potri.003G078500.3.p locus=Potri.003G078500 ID=Potri.003G078500.3.v4.1 annot-version=v4.1 MASVENDDGTVKYGIVGVGMMGREHLINLYHLRSQNVGVVAIADPHVPSQQLAVELAQSFGWHLEVFSGHRELLDSGLCDVVVVSSPNMTHYRILMDIIS HPKPHHVLVEKPLCTTVADCKKVVDAARRRTDMLVQVGLEYRYMPPVAKLIEVVRGGAVGQVKMVAIREHRFPFLVKVDNWNRFNANTGGTLVEKCCHFF DLMKLFAGANPVRVMASGAIDVNHKDEVYDGKVPDIIDNAYVIVEFDNGSRGMLDLCMFAEGSKNEQEISVVGDIGKGEAFVPESLVRFGTRVAGRDGVQ TLKAEDRRIKYDGLHHGSSYLEHLTFLSAVRAKGEKAPAVDLQDGLISVAIGVAAQLSIEKGQFVTIQEVMGEHYG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17370			Oxidoreductase family protein ...		Potri.003G078500 [exp]	0	1
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Potri.009G129500 [exp]	13.85	0.7883	TIM.2
AT5G55510			Mitochondrial import inner mem...		Potri.011G088500 [exp]	14.69	0.7868
AT3G43660			Vacuolar iron transporter (VIT...		Potri.001G456000 [exp]	20.83	0.7787
AT3G47590			alpha/beta-Hydrolases superfam...		Potri.018G068000 [exp]	22.36	0.7819
AT4G33460		ABCI10, ATNAP13...	embryo defective 2751, ATP-bin...		Potri.005G062800 [exp]	38.82	0.8020
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Potri.016G143600 [exp]	40.91	0.7684
AT2G14880			SWIB/MDM2 domain superfamily p...		Potri.009G092200 [exp]	48.78	0.7704
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Potri.005G092600 [exp]	64.89	0.7861
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Potri.014G149800 [exp]	68.99	0.7960
AT2G35360			ubiquitin family protein (.1)		Potri.003G089400 [exp]	84.10	0.7586

Compare expression of checked genes

Potri.003G078500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.