Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPL15.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16720 333 / 7e-118 Ribosomal protein L23/L15e family protein (.1) AT4G17390 332 / 2e-117 Ribosomal protein L23/L15e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G106800 [exp] 368 / 1e-131 AT4G16720 333 / 1e-117 Ribosomal protein L23/L15e family protein (.1) Potri.001G156100 [exp] 367 / 3e-131 AT4G16720 330 / 2e-116 Ribosomal protein L23/L15e family protein (.1) Potri.002G141500 [exp] 359 / 3e-128 AT4G16720 331 / 4e-117 Ribosomal protein L23/L15e family protein (.1) Potri.014G057300 [exp] 359 / 3e-128 AT4G16720 331 / 4e-117 Ribosomal protein L23/L15e family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004743 [exp] 349 / 4e-124 AT4G16720 345 / 1e-122 Ribosomal protein L23/L15e family protein (.1) Lus10007805 [exp] 349 / 4e-124 AT4G16720 345 / 1e-122 Ribosomal protein L23/L15e family protein (.1) Lus10009653 [exp] 347 / 3e-123 AT4G16720 350 / 2e-124 Ribosomal protein L23/L15e family protein (.1) Lus10000165 [exp] 348 / 5e-123 AT4G16720 344 / 2e-121 Ribosomal protein L23/L15e family protein (.1) Lus10028965 [exp] 347 / 8e-123 AT4G16720 343 / 5e-121 Ribosomal protein L23/L15e family protein (.1) Lus10009017 [exp] 340 / 2e-120 AT4G16720 343 / 1e-121 Ribosomal protein L23/L15e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0652 [poplar] [flax] S24e_L23_L15e PF00827 [poplar] [flax] Ribosomal_L15e Ribosomal L15
Representative CDS sequence Show only first row Show all	>Potri.003G078700.2 pacid=42786763 polypeptide=Potri.003G078700.2.p locus=Potri.003G078700 ID=Potri.003G078700.2.v4.1 annot-version=v4.1 ATGGGGGCTTACAAGTACGTTTCTGAGCTATGGAGGAAGAAACAATCAGATGTGATGAGGTTTTTGCAAAGGGTTAGGTGTTGGGAGTACCGCCAACATC CTTCAATTGTTCGTGTCACGCACCCCACACGCCCTGACAAGGCTCGCCGCTTGGGCTATAAGGCCAAGCAGGGATATGTTGTTTATCGTGTACGTGTTAG GCGAGGTGGTAGGAAGAGGCCTGTTCCCAAGGGTATCGTATATGGTAAGCCCACAAACCAGGGTGTTACTCAACTCAAGTTTCAACGTAGCAAGAGGTCT GTGGCAGAGGAGCGTGCTGGCCGGAAATTGGGGGGCCTCAGGGTTCTCAATTCATACTGGATTAATGAGGACTCTACTTATAAGTACTTTGAGGTAATCT TGGTTGATGTTGCCCACAATGCAATCCGGAATGACCCAAGAATCAACTGGCTCTGCAACCCTGTGCACAAGCATAGGGAGCTCCGTGGCCTTACCTCTGC CGGGAAGAAATACAGGGGTCTACGTGGCAGGGGACACTTGCACCACAAAGCTCGACCTTCTCGGCGGGCAAACTGGAAGAGAAACAACACCCTCTCCCTT CGTCGATACCGCTGA
AA sequence Show only first row Show all	>Potri.003G078700.2 pacid=42786763 polypeptide=Potri.003G078700.2.p locus=Potri.003G078700 ID=Potri.003G078700.2.v4.1 annot-version=v4.1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRS VAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDVAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGRGHLHHKARPSRRANWKRNNTLSL RRYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.003G078700 [exp]	0	1	Pt-RPL15.4
AT1G10840		TIF3H1	translation initiation factor ...		Potri.014G147100 [exp]	2.64	0.8663	TIF3.5
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.005G098100 [exp]	4.58	0.8836	LOS1.3
AT5G61170			Ribosomal protein S19e family ...		Potri.015G056100 [exp]	5.47	0.8692
AT4G28510		ATPHB1	prohibitin 1 (.1)		Potri.007G134700 [exp]	6.32	0.8757	PHB1.1
AT4G39200			Ribosomal protein S25 family p...		Potri.010G239300 [exp]	7.61	0.8863
AT3G02530			TCP-1/cpn60 chaperonin family ...		Potri.004G101500 [exp]	8.00	0.8643
AT2G20585		NFD6	nuclear fusion defective 6 (.1...		Potri.017G014500 [exp]	8.36	0.8561
AT2G44120			Ribosomal protein L30/L7 famil...		Potri.006G073200 [exp]	10.09	0.8684
AT3G62840			Small nuclear ribonucleoprotei...		Potri.014G129100 [exp]	11.40	0.8566
AT5G26360			TCP-1/cpn60 chaperonin family ...		Potri.004G133800 [exp]	16.30	0.7773

Compare expression of checked genes

Potri.003G078700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.