Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47430 635 / 0 DWNN domain, a CCHC-type zinc finger (.1.2.3) AT4G17410 623 / 0 DWNN domain, a CCHC-type zinc finger (.1.2.3) AT2G32950 51 / 3e-06 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G156000 [exp] 1074 / 0 AT5G47430 620 / 0.0 DWNN domain, a CCHC-type zinc finger (.1.2.3) Potri.013G112200 [exp] 286 / 5e-88 AT5G47430 260 / 1e-78 DWNN domain, a CCHC-type zinc finger (.1.2.3) Potri.004G002700 [exp] 49 / 1e-05 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G159300 [exp] 48 / 2e-05 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004741 [exp] 691 / 0 AT5G47430 648 / 0.0 DWNN domain, a CCHC-type zinc finger (.1.2.3) Lus10007803 [exp] 572 / 0 AT5G47430 517 / 2e-175 DWNN domain, a CCHC-type zinc finger (.1.2.3) Lus10034393 [exp] 171 / 2e-46 AT5G47430 186 / 4e-52 DWNN domain, a CCHC-type zinc finger (.1.2.3) Lus10029205 [exp] 143 / 8e-37 AT5G47430 175 / 2e-48 DWNN domain, a CCHC-type zinc finger (.1.2.3) Lus10021702 [exp] 117 / 3e-28 AT4G17410 140 / 1e-36 DWNN domain, a CCHC-type zinc finger (.1.2.3) Lus10029990 [exp] 52 / 2e-06 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10035332 [exp] 50 / 6e-06 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10035046 [exp] 45 / 2e-05 ND 40 / 2e-04 Lus10007802 [exp] 44 / 0.0002 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF08783 [poplar] [flax] DWNN DWNN domain CL0511 [poplar] [flax] Retroviral_zf PF13696 [poplar] [flax] zf-CCHC_2 Zinc knuckle
Representative CDS sequence Show only first row Show all	>Potri.003G078800.1 pacid=42784509 polypeptide=Potri.003G078800.1.p locus=Potri.003G078800 ID=Potri.003G078800.1.v4.1 annot-version=v4.1 ATGGCTGTGTATTACAAATTTAAGAGTGCTAGAGATTATGATTCAATCCCAATGGACGGTCCATTTATATCCGTTGGTACTTTGAAAGAAAAAATATTTG AATCAAAGCATTTGGGAAGGGGTACAGACTTCGACCTTGTTGTCACTAATGCCCAAACCAATGAAGAGTATCTTGATGAAGCAATGTTAATTCCCAAAAA TACCTCTGTATTAATACGCCGGGTTCCAGGGAGGCCTCGTCTGCCCATTGTTACAGAGCAAGAGCCAAAGTTGGAAACTAAGGTGGAGGACACCCTTCCA GAGAAGGGTAGTTTTATGGGTGCTGATTCATCTTCCATGAGATATACTGAAGACAATGAATGGGATGAATTTGGAAACGATTTGTATTCCATTCCTGATG TACTGCCTGTTCAATCTAGTAATCCACCTCCTGATGTGGCCCCTACAAACAAGGCTGATGAGGACGACAGAATTAAGGCATTGATTGATACCCCAGCATT GGACTGGCAGCGTCAGGGTGCTGATGGCTTTGGTGCTGGTAGAGGTTTTGGTAGGGGTGTGGCTGGAAGAATGGGTGGGCGTGGTTTTGGTCGATTAGGC TTGGAGCGGAAAACACCTCCACAAGGCTATGTATGCCACAGATGCAAGATTCCTGGGCATTTTATTCAACACTGCCCTACAAATGGTGACCCTAATTATG ATATTAAAAGAGTAAAGCCACCTACTGGTATTCCAAAGTCAATGCTGATGGCTACCCCAGATGGCTCATATGCTTTACCTAGTGGTGCAGTTGCTGTTTT GAAGCCAAATGAGGCTGCTTTTGAGAGAGAAATTGAAGGCCTACCTTCCACACGGCCTGTTGGTGATCTTCCACCTGAACTTCACTGCCCACTGTGCAAG GAAGTTATGAAAGATGCAGTCTTAACAAGCAAATGTTGTTTCACGAGCTTCTGTGACAAGTGTATAAGAGATTACATTATCTCAAAGTCAAAGTGTGTAT GTGGGGTATCAAATGTCCTTGCAGATGATCTTCTTCCTAACAAGACTCTCAGGGATACAATCAATCGTATTTTGGAGTCTGGTAACAGTAGTGCTGAAAA TGTAGGAAGCGCCTTTCAAGTTCAAGATATGGAGTCTGCACGCTGTCCACCTCCAAAGATTCCATCACCCACACAGTCTGCTGCATCTAAGGGAGAACAT AAGCCGTCTCCTGTTAATGAAGAATCTCCAATTTTAAACAAGGCAATAGCTGAGGAGGAGAAGCCTCTTATTGCTTCTCAGCAAGTCCCTGAGAAAGTGA GGACTGCTAAAGCTGTGGATGTATCTGAGGCTACTCATGAGTCAATAAGTGTGAAGGAGCCAGCTTCGCAAGGAAGTGCTCCACTGGCTGAGGAAGAAGT TCAGCAGAAGCTGGCTCCTGGTGAGGCAGGGAAGAAAAAGAAAAAGAAGAAAGTTCGCATGCCTCCGAATGATTTGTGGAAAGCTTCTCAGGATCTTGCA GCTGAGAGCTTTATGATGCCAATGGGTCCCTCTGCCTTTAATCCATATTGGAGTGGCATGCAGACTGGAATGGAAGGATACATGGCTCCTTATCCAGGTC CAATGCCCTTTATGGGTTATGGATTAAGCCCTTTGGATATGCCATATGGGGGAGTTATGCCTCCAGATCCTTTTGGTGCCCAGAGTTATATGATGCCTGC TGTTCCACCTCAGAGGGATCTTGCTGAATTTGGAATGAACATGAATCTCAGACCTCCTCTAATGAGCAGGGAGGAATTTGAGGCCCGCAAAGCTGATGTC AGGAGGCGTCGTGAAAATGAGAGGCGAGCTGAAAGGGAGTTTTCCAGAGATTGGGATCCGGGTAGGGAAGTGAGCGGCGGCGGCGATGTTTCTTCAATGA AATCTAAGTCAATACCACAATCCAGTGCCAGCGGCGATCCCCATCATAATCGTCGAAGGTCTGAGAGATTATCACCGGAACGTTCAGCCCGTGAGATTGA CCCATTACCACCACGCCCTTCTAAAAGAAAGTCTGACCGCCATGAACACGGTGATAGAGATGCTGATGATTTTGATTACCATGAGCGTGACCGTAGTGAC CGTGATCACCGCCACCACCACCGCCACCGTTCAGAATCCTCATCCAAAGCTGTATCTGAGACTACCACTAAACCCCCTTCTACAACAGTAACAGACCGAA AGCAAAAAGTTAGCGTGTTCTCTCGCATTAGCTTTCCAGCAGAAGGAGAACCCACCAGTAAGAAGCGCAAGGTATCATCCTCTAGTGAAGCAGCACCAGC AGCTACTGGTGGCGGCGGCCCTTTATCTTCTACACATCACAAGTCATCGTCACCAGTTAATAATGGCTATTATGATGACTACAAGTCATCTTCTGTGAAG ACCAGAAAGAGCAGTAGCAGTGTTGCTGCCACGGCCGCCATGGACTACGAGTCCAGTGATGATGACAGGCACTTCAAGAGGAAACCCTCTAGGTATGAGC CATCACCTCCTCCTCCAGCAGAGTGGGAGGAGGATGTTAAGCATTCAAGAAGAGATAAGGACCGGAAGCATAGATAA
AA sequence Show only first row Show all	>Potri.003G078800.1 pacid=42784509 polypeptide=Potri.003G078800.1.p locus=Potri.003G078800 ID=Potri.003G078800.1.v4.1 annot-version=v4.1 MAVYYKFKSARDYDSIPMDGPFISVGTLKEKIFESKHLGRGTDFDLVVTNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRLPIVTEQEPKLETKVEDTLP EKGSFMGADSSSMRYTEDNEWDEFGNDLYSIPDVLPVQSSNPPPDVAPTNKADEDDRIKALIDTPALDWQRQGADGFGAGRGFGRGVAGRMGGRGFGRLG LERKTPPQGYVCHRCKIPGHFIQHCPTNGDPNYDIKRVKPPTGIPKSMLMATPDGSYALPSGAVAVLKPNEAAFEREIEGLPSTRPVGDLPPELHCPLCK EVMKDAVLTSKCCFTSFCDKCIRDYIISKSKCVCGVSNVLADDLLPNKTLRDTINRILESGNSSAENVGSAFQVQDMESARCPPPKIPSPTQSAASKGEH KPSPVNEESPILNKAIAEEEKPLIASQQVPEKVRTAKAVDVSEATHESISVKEPASQGSAPLAEEEVQQKLAPGEAGKKKKKKKVRMPPNDLWKASQDLA AESFMMPMGPSAFNPYWSGMQTGMEGYMAPYPGPMPFMGYGLSPLDMPYGGVMPPDPFGAQSYMMPAVPPQRDLAEFGMNMNLRPPLMSREEFEARKADV RRRRENERRAEREFSRDWDPGREVSGGGDVSSMKSKSIPQSSASGDPHHNRRRSERLSPERSAREIDPLPPRPSKRKSDRHEHGDRDADDFDYHERDRSD RDHRHHHRHRSESSSKAVSETTTKPPSTTVTDRKQKVSVFSRISFPAEGEPTSKKRKVSSSSEAAPAATGGGGPLSSTHHKSSSPVNNGYYDDYKSSSVK TRKSSSSVAATAAMDYESSDDDRHFKRKPSRYEPSPPPPAEWEEDVKHSRRDKDRKHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47430			DWNN domain, a CCHC-type zinc ...		Potri.003G078800 [exp]	0	1
					Potri.017G079901 [exp]	14.89	0.8264
AT2G35510		SRO1	similar to RCD one 1 (.1)		Potri.002G112300 [exp]	25.21	0.7902
AT1G56400			F-box family protein (.1.2)		Potri.011G136200 [exp]	28.98	0.8206
AT2G35050			Protein kinase superfamily pro...		Potri.003G110000 [exp]	32.40	0.7796
					Potri.004G234150 [exp]	33.98	0.8131
AT1G08620		PKDM7D	Transcription factor jumonji (...		Potri.013G046700 [exp]	39.94	0.7370
AT1G74830			Protein of unknown function, D...		Potri.012G073400 [exp]	43.06	0.8090
AT3G14075			Mono-/di-acylglycerol lipase, ...		Potri.003G067900 [exp]	47.11	0.8021
AT1G28210		ATJ1	DNAJ heat shock family protein...		Potri.005G160200 [exp]	52.64	0.7825
AT4G34100			RING/U-box superfamily protein...		Potri.001G304100 [exp]	53.58	0.7930

Compare expression of checked genes

Potri.003G078800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.