Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47420 437 / 1e-156 Tryptophan RNA-binding attenuator protein-like (.1) AT4G17420 435 / 1e-155 Tryptophan RNA-binding attenuator protein-like (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G155900 [exp] 528 / 0 AT5G47420 444 / 2e-159 Tryptophan RNA-binding attenuator protein-like (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007800 [exp] 497 / 3e-180 AT4G17420 445 / 9e-160 Tryptophan RNA-binding attenuator protein-like (.1.2.3) Lus10004739 [exp] 476 / 2e-170 AT4G17420 427 / 6e-151 Tryptophan RNA-binding attenuator protein-like (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF01987 [poplar] [flax] AIM24 Mitochondrial biogenesis AIM24
Representative CDS sequence Show only first row Show all	>Potri.003G078900.1 pacid=42784789 polypeptide=Potri.003G078900.1.p locus=Potri.003G078900 ID=Potri.003G078900.1.v4.1 annot-version=v4.1 ATGGCTGCACCTTTCTTCTCTACTCCGTTTCAACCTTACGTTTATCAGAGTCATCAAGGTGCTGTGATACCTTTCCAGATTCTGGGGGGTGAAGCTCAGA TGGTCCAGATAATGTTGAAACCACAAGAAAAAATTATTGCAAAACCAGGTTCTATGTGCTTCATGTCTGGGTCCATTGAAATGGAGAATGTTTTAATCCC TGAAAATGAAGTGGGTGTCTGGCAGTGGTTTTTTGGCAAGGCTGTTACTAGTGTAATCTTCCGTAATCCTGGTCCAAGTGATGGATTTGTTGGAATTGCT ACACCTTCTCTTGCAAGAATCCTCCCGATTGACTTGGCGAAGTTTGGAGGAGAGATTTTATGCCTGCCAGATGCATTCCTTTGCTCCATCAATGATGTGA AGGTCAGCAATGCATTAGATCACAGGGCACGTAATGTCATGCCTAATATAGAGGGGTTTTTGAGGCAGAAGCTAACTGGACAGGGACTTGCATTTATTCT TGCTGGAGGATCTGTTGCACAGAAAGTTCTTGAGGTGGGTGAGGTATTAGCTGTTGACGTGTCTTGCATTGTTGCCCTTAATACCACAGTCAATGTCCAA ATCAAATACAATGGGCCAGTGAGACGAGCAGTCTTTGGGGGCGACAATTTAGTAACAGCCACTCTAACAGGACCAGGCATCGTCTTTATCCAAAGTTTGC CCTTTCAACTGTTTTCTCAGCGCATTGCTAGGGCAGTGACATCCCCAAACATGAGAGAGAATCCAAAGTTCTTTGTGCAGATTGCGATTTTCTTTTTCCT GGCATATGTTGTGATTGTATCTTCATTAATCTTGACCGATGTTTGA
AA sequence Show only first row Show all	>Potri.003G078900.1 pacid=42784789 polypeptide=Potri.003G078900.1.p locus=Potri.003G078900 ID=Potri.003G078900.1.v4.1 annot-version=v4.1 MAAPFFSTPFQPYVYQSHQGAVIPFQILGGEAQMVQIMLKPQEKIIAKPGSMCFMSGSIEMENVLIPENEVGVWQWFFGKAVTSVIFRNPGPSDGFVGIA TPSLARILPIDLAKFGGEILCLPDAFLCSINDVKVSNALDHRARNVMPNIEGFLRQKLTGQGLAFILAGGSVAQKVLEVGEVLAVDVSCIVALNTTVNVQ IKYNGPVRRAVFGGDNLVTATLTGPGIVFIQSLPFQLFSQRIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSLILTDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47420			Tryptophan RNA-binding attenua...		Potri.003G078900 [exp]	0	1
AT3G20290		ATEHD1	EPS15 homology domain 1 (.1.2)		Potri.001G356300 [exp]	9.89	0.7310
AT2G40316			unknown protein		Potri.008G073200 [exp]	15.36	0.7474
AT4G38510			ATPase, V1 complex, subunit B ...		Potri.004G177500 [exp]	20.29	0.7350
AT2G28430			unknown protein		Potri.004G210800 [exp]	36.18	0.7260
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Potri.004G132300 [exp]	40.62	0.6976
AT1G44960			SNARE associated Golgi protein...		Potri.001G070800 [exp]	51.39	0.7067
AT5G51400			PLAC8 family protein (.1)		Potri.003G108800 [exp]	79.74	0.6793
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Potri.009G136900 [exp]	90.11	0.6927
AT2G43810			Small nuclear ribonucleoprotei...		Potri.008G078400 [exp]	99.29	0.6929
AT5G09920		NRPB4, ATRPB15....	RNA polymerase II, Rpb4, core ...		Potri.005G084900 [exp]	129.52	0.6719

Compare expression of checked genes

Potri.003G078900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.