Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16745 637 / 0 Exostosin family protein (.1.2) AT5G19670 485 / 2e-166 Exostosin family protein (.1) AT5G25820 463 / 3e-157 Exostosin family protein (.1) AT4G32790 454 / 3e-154 Exostosin family protein (.1) AT5G11610 407 / 1e-136 Exostosin family protein (.1.2) AT5G37000 381 / 2e-126 Exostosin family protein (.1) AT5G03795 343 / 2e-112 Exostosin family protein (.1) AT3G07620 321 / 3e-104 Exostosin family protein (.1) AT5G25310 319 / 2e-103 Exostosin family protein (.1) AT5G11130 293 / 3e-93 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G085500 [exp] 490 / 3e-167 AT5G19670 693 / 0.0 Exostosin family protein (.1) Potri.006G238900 [exp] 483 / 7e-164 AT5G19670 592 / 0.0 Exostosin family protein (.1) Potri.006G239000 [exp] 475 / 5e-161 AT5G25820 607 / 0.0 Exostosin family protein (.1) Potri.018G043700 [exp] 474 / 6e-161 AT5G25820 635 / 0.0 Exostosin family protein (.1) Potri.018G085400 [exp] 454 / 1e-153 AT5G19670 558 / 0.0 Exostosin family protein (.1) Potri.014G171100 [exp] 348 / 3e-114 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.006G118000 [exp] 343 / 4e-112 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.014G170900 [exp] 330 / 1e-107 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.018G025400 [exp] 315 / 1e-101 AT5G25310 518 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002799 [exp] 502 / 1e-172 AT5G25820 627 / 0.0 Exostosin family protein (.1) Lus10000608 [exp] 499 / 2e-171 AT4G32790 630 / 0.0 Exostosin family protein (.1) Lus10043239 [exp] 493 / 2e-169 AT5G19670 748 / 0.0 Exostosin family protein (.1) Lus10011121 [exp] 484 / 2e-168 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10012973 [exp] 484 / 4e-165 AT5G19670 716 / 0.0 Exostosin family protein (.1) Lus10034951 [exp] 476 / 8e-162 AT5G19670 701 / 0.0 Exostosin family protein (.1) Lus10023927 [exp] 453 / 7e-155 AT5G25820 561 / 0.0 Exostosin family protein (.1) Lus10043238 [exp] 409 / 1e-137 AT4G32790 493 / 7e-170 Exostosin family protein (.1) Lus10011120 [exp] 408 / 6e-137 AT4G32790 501 / 1e-172 Exostosin family protein (.1) Lus10039142 [exp] 337 / 2e-109 AT5G03795 603 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.003G079000.1 pacid=42785406 polypeptide=Potri.003G079000.1.p locus=Potri.003G079000 ID=Potri.003G079000.1.v4.1 annot-version=v4.1 ATGATTGGGAACAGAGAACTTTTTGGAGTTGTTCTGATGAGAGAATTATTATGGCGTTGCGCTTGGAAAAAAGTTGATTGGAGAAAACTGCTGTTCCTTG GTGTGGTCATGACAATAGTTGGAGTTTTGGTTCCCACATATGCATTTCCTCATACAGTGAATATGTGGTTCCTTTCTCCACCTCTAGCTGTTTCATCGTA CGTATCCTTGAATGGTAGTATGCAGTTAAGAGAGGCTCTTACTGAAGCAAGGGTTCAACAATTTCCTCCTGTTTCTGCTGCTTCAGTTCTTTCTCCGAAT ACCACAGTTCCATCTAAAAATAAAAGAGCCAAAGTCTCTCGGACGAGAAACTCTGTATTAAAAAGGAGAAAGAAGAAGAGCAAGGAAAATGATGAATCAA AGGTTGTTCTTCCTCCTCCTCGTAGTCCTATACCTCCTCGTATGCAGAGATTCATTTGGTCCTTGTCACCGAATGATGCACTTATATATGCCAAAAGGGA GATTGAGCATGCCCCAGTGGTTATTGATGATCCTTATCTGAGTGCCCATATATTCCGCAACATTTCTGTTTTTAAGAGGAGCTACGAGTTGATGGAAACG ATACTTAAAGTTTACATCTACCCAGATGGAGATAAGCCCATCTTTCATCAACCGCATCTCTATGGAATCTATGCTTCTGAAGGATGGTTTATGAAGTTTA TGGAGGCAAGCAGGGAGTTTGTCTCGAGAGATCCAGAAAAGGCTCATCTATTTTATCTTCCATACAGTGCACGCCAGCTGGAGGTAGCGGTTTATGTGCC TAATTCACATAATTTGAGACCATTGTCAATCTTTATGCGAGACTATGCAAACATGATTGCTGCAAAGTATCCATATTGGAACCGCACACATGGAAGGGAC CATTTTCTTGTTGCATGCCATGACTGGGGACCTTACGCATTGACTATGCACGAGGAACTAACCAAAAACACCATGAAGGCTTTATGCAATGCAGATGTGT CTGAAGGTATTTTTACTGCTGGCCAGGACGTATCCCTGCCTGAAACTACCATAAGGAGTCCCAAGAGACCACTTAGAAATGTCGGTGGTGGTATAAGAGT ATCACAGCGTCCAATCCTTGCCTTCTTCGCTGGAAATTTGCATGGAAGGGTCCGACCGACACTCCTGAAGTACTGGCACAACAAAGATGATGACATGAAA ATATATGGGCCGCTACCCATTGGTATATCTCGAAAGATGACTTATGTTCAACATATGAAATCTAGCAAGTACTGTATATGTCCAATGGGCTATGAAGTTA ACAGCCCTCGGATCGTCGAGGCCATTTATTACGAGTGTGTTCCAGTCATCATTGCAGATAATTTTGTTCTTCCTTTCAATGAAGTTTTGGATTGGAGTGC CTTCTCTGTTGTTGTAGCGGAGAAGGATATCCCGAAGCTGAAGGAGATTCTTTTGGCTATCCCACTGAGAAGATATCTTACAATGCTAGCTAATCTGAAG ACAGTGCAAAAGCATTTTCTTTGGAACCCAAGACCACTCAGGTACGATTTGTTCCACATGATTCTGCATTCCATTTGGTTTAGCAGGTTGAACCATGTTC AAATCCCACAATCGTAG
AA sequence Show only first row Show all	>Potri.003G079000.1 pacid=42785406 polypeptide=Potri.003G079000.1.p locus=Potri.003G079000 ID=Potri.003G079000.1.v4.1 annot-version=v4.1 MIGNRELFGVVLMRELLWRCAWKKVDWRKLLFLGVVMTIVGVLVPTYAFPHTVNMWFLSPPLAVSSYVSLNGSMQLREALTEARVQQFPPVSAASVLSPN TTVPSKNKRAKVSRTRNSVLKRRKKKSKENDESKVVLPPPRSPIPPRMQRFIWSLSPNDALIYAKREIEHAPVVIDDPYLSAHIFRNISVFKRSYELMET ILKVYIYPDGDKPIFHQPHLYGIYASEGWFMKFMEASREFVSRDPEKAHLFYLPYSARQLEVAVYVPNSHNLRPLSIFMRDYANMIAAKYPYWNRTHGRD HFLVACHDWGPYALTMHEELTKNTMKALCNADVSEGIFTAGQDVSLPETTIRSPKRPLRNVGGGIRVSQRPILAFFAGNLHGRVRPTLLKYWHNKDDDMK IYGPLPIGISRKMTYVQHMKSSKYCICPMGYEVNSPRIVEAIYYECVPVIIADNFVLPFNEVLDWSAFSVVVAEKDIPKLKEILLAIPLRRYLTMLANLK TVQKHFLWNPRPLRYDLFHMILHSIWFSRLNHVQIPQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16745			Exostosin family protein (.1.2...		Potri.003G079000 [exp]	0	1
AT5G53490			Tetratricopeptide repeat (TPR)...		Potri.012G018100 [exp]	2.82	0.8439
AT1G09575			Protein of unknown function (D...		Potri.013G161300 [exp]	3.46	0.8059
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.017G030700 [exp]	4.47	0.8000
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Potri.009G048000 [exp]	7.00	0.7931
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Potri.010G076700 [exp]	10.09	0.8113
ATCG00690		PSBTC, ATCG0069...	photosystem II reaction center...		Potri.019G028351 [exp]	17.74	0.7909
AT5G45040		CYTC6A	cytochrome c6A, Cytochrome c (...		Potri.015G121101 [exp]	20.92	0.8073
AT3G53140			O-methyltransferase family pro...		Potri.006G120000 [exp]	21.00	0.7438	COMTL4
ATCG00690		PSBTC, ATCG0069...	photosystem II reaction center...		Potri.011G113800 [exp]	28.63	0.7783
AT4G15110		CYP97B3	"cytochrome P450, family 97, s...		Potri.006G006200 [exp]	30.19	0.7915

Compare expression of checked genes

Potri.003G079000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.