Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ACX1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16760 1144 / 0 ATACX1, ACX1 acyl-CoA oxidase 1 (.1.2) AT2G35690 1110 / 0 ACX5 acyl-CoA oxidase 5 (.1) AT5G65110 285 / 1e-86 ATACX2, ACX2 acyl-CoA oxidase 2 (.1.2) AT1G06290 230 / 3e-66 ATACX3, ACX3 acyl-CoA oxidase 3 (.1) AT1G06310 213 / 5e-60 ACX6 acyl-CoA oxidase 6 (.1) AT3G51840 59 / 8e-09 ATG6, ATSCX, ACX4 acyl-CoA oxidase 4 (.1) AT3G45300 42 / 0.001 IVDH, ATIVD, IVD isovaleryl-CoA-dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G155500 [exp] 1296 / 0 AT4G16760 1152 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.005G077600 [exp] 276 / 3e-83 AT5G65110 1179 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.007G090400 [exp] 276 / 4e-83 AT5G65110 1203 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.013G123500 [exp] 230 / 3e-66 AT1G06290 1061 / 0.0 acyl-CoA oxidase 3 (.1) Potri.019G092600 [exp] 222 / 3e-63 AT1G06290 1070 / 0.0 acyl-CoA oxidase 3 (.1) Potri.016G118000 [exp] 70 / 2e-12 AT3G51840 750 / 0.0 acyl-CoA oxidase 4 (.1) Potri.006G101800 [exp] 64 / 2e-10 AT3G51840 751 / 0.0 acyl-CoA oxidase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004386 [exp] 1206 / 0 AT4G16760 1107 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10004745 [exp] 1203 / 0 AT4G16760 1112 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10040183 [exp] 1137 / 0 AT4G16760 1051 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10007815 [exp] 1125 / 0 AT4G16760 1019 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10041711 [exp] 277 / 3e-83 AT5G65110 1199 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10016249 [exp] 228 / 3e-65 AT1G06290 965 / 0.0 acyl-CoA oxidase 3 (.1) Lus10039894 [exp] 223 / 3e-63 AT1G06290 1036 / 0.0 acyl-CoA oxidase 3 (.1) Lus10024038 [exp] 217 / 2e-61 AT5G65110 1122 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10002177 [exp] 184 / 8e-51 AT1G06290 754 / 0.0 acyl-CoA oxidase 3 (.1) Lus10027811 [exp] 64 / 2e-10 AT3G51840 741 / 0.0 acyl-CoA oxidase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0087 [poplar] [flax] Acyl-CoA_dh PF01756 [poplar] [flax] ACOX Acyl-CoA oxidase CL0087 [poplar] [flax] PF02770 [poplar] [flax] Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain CL0544 [poplar] [flax] AcylCoA_ox_dh_N PF14749 [poplar] [flax] Acyl-CoA_ox_N Acyl-coenzyme A oxidase N-terminal
Representative CDS sequence Show only first row Show all	>Potri.003G079200.1 pacid=42787324 polypeptide=Potri.003G079200.1.p locus=Potri.003G079200 ID=Potri.003G079200.1.v4.1 annot-version=v4.1 ATGGAAGGAGTGGATATCCTGCCTCACGAGAGGAGCAAGAAGCAGTTCGATGTGGATGCCATGAAGATCGTGTGGGCTGGTTCTCGCCAGGCGTTTGAAG TCTCAGATCGCATGGCTCGTCTTGTGGCCTCCGATCCGGCATTTCAAAAGGATAACAGGAGTCGGTTAGGGAGGAAAGAATTGTTCAAAAACACTCTGAG GAAAGCAACTTATGCATGGAAACGTATCATTGAGCTTCGCCTTACTGAAGAAGAGGCTGGTAGGCTAAGGTTTTTCGTGGATGAGCCTGCTTTTACTGAT CTTCATTGGGGAATGTTTGTACCTGCTATTAAAGGACAAGGCACTGAAGAGCAGCAACAGAAGTGGTTGCCATTGGCATATAAGATGCAGATAATTGGCT GCTATGCACAAACTGAACTTGGTCATGGATCCAATGTTCAAGGGCTTGAAACAACTGCAACCTTTGATCCTGACAAGGATGAGTTTGTCATTCATAGTCC TACATTGACATCAAGCAAATGGTGGCCTGGAGGACTGGGTAAAGTTTCCACACACGCTGTTGTTTATGCACGCCTTATAACCAATGGTGAAGAACATGGA GTGCATGGTTTTATTGTCCAGCTTAGGAGCCTGGACGATCACATGCCTCTTCCAGGCATAACCATTGGTGATATTGGAATGAAATTTGGAAACGGGGCAT ATAACACCATGGATAATGGTGTTTTGACATTTGATCATGTTCGCATCCCAAGGAACCAGATGTTGATGAGAGTCTTTCAGGTTACCAGGGAAGGGAAATG TGTGCAATCCAATGTTCCACGGCAGTTGATTTATGGCACTATGGTGTTCGTGCGACAAACAATTGTAGCTGATGCGTCCTCTGCTTTGTCTCGGGCAGTT TGTATTGCTACAAGGTATAGCGCTGTTCGCAGACAGTTTGGTTCACAGGATGGAGTGGAGACCCAGGTGATTGATTACAAAACCCAGCAAAATAGACTCT TTCCTTTGCTGGCTTCTGCCTATGCATTCAGATTTGTTGGTGAATGGCTGAAATGGCTTTATACGGATGTGACCCAGAGGTTGCAAGCTAATGATTTTTC TACATTACCTGAGGCTCATGCATGTACCGCAGGCTTGAAGTCTTTGACTACCACTGCCACTGCTGATGCTATTGAAGAATGTAGGAAACTGTGTGGTGGC CATGGTTATCTTTGTGCCAGTGGGCTTCCTGAATTGTTTGCAGTATATGTCCCTGCCTGTACATATGAAGGAGACAATGTTGTTCTCCTTTTACAGGTTG CAAGGTTTCTCGTGAAGACTGTTTCTCAGCTTGGTTCTGGAAAAGAGCCTATTGGAACAACAGCTTATTTGGGACGAGTCCAGGATCTTATGCAGTGTCA CTGTGAAGTTCAAACAGCTGAGGATTGGTTAAAGCCTAGTGTAATGCTGGAGGCATTTGAAGCCAGGTCTGCCAGGATGTGCGTTGCCCGTGCTCAAAAT CTTAGCAAATTTGCAAATCCTGAAGATGGTTTTGCTGAACTCTCTGCTGATCTAGTTGAGGCTGCGGTTGCTCATTGCCAATTAATTGTTGTTTCCAAGT TCTTTGACAAATTGCAGCAAGATATACCTGGAAATGGGGTGAAACAACAGTTGCAGAATCTCTGCTACATCTATGCTTTAAACCTTCTTCACAAACATCT GGGTGATTTCCTCTCTACTGGCTGCATTACCCCCAAGCAAGCTTCACTCGCAAATGATCAGCTGAGATCTTTATATTCCCAGGTCCGACCCAATGCAATT GCACTTGTCGATGCATTTAATTACACTGATCACTACCTTGGGTCGGTTCTCGGCCGCTATGATGGAAATGTGTATCCCAAACTTTATGAAGAAGCATGGA AGGATCCTCTGAATGACTCTGTTTTGCCTGATGGCTACAATGAGTATATCCGCCCTATGCTGAAGCAACAGCTCCACAACGCAAGACTCTGA
AA sequence Show only first row Show all	>Potri.003G079200.1 pacid=42787324 polypeptide=Potri.003G079200.1.p locus=Potri.003G079200 ID=Potri.003G079200.1.v4.1 annot-version=v4.1 MEGVDILPHERSKKQFDVDAMKIVWAGSRQAFEVSDRMARLVASDPAFQKDNRSRLGRKELFKNTLRKATYAWKRIIELRLTEEEAGRLRFFVDEPAFTD LHWGMFVPAIKGQGTEEQQQKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPDKDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITNGEEHG VHGFIVQLRSLDDHMPLPGITIGDIGMKFGNGAYNTMDNGVLTFDHVRIPRNQMLMRVFQVTREGKCVQSNVPRQLIYGTMVFVRQTIVADASSALSRAV CIATRYSAVRRQFGSQDGVETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADAIEECRKLCGG HGYLCASGLPELFAVYVPACTYEGDNVVLLLQVARFLVKTVSQLGSGKEPIGTTAYLGRVQDLMQCHCEVQTAEDWLKPSVMLEAFEARSARMCVARAQN LSKFANPEDGFAELSADLVEAAVAHCQLIVVSKFFDKLQQDIPGNGVKQQLQNLCYIYALNLLHKHLGDFLSTGCITPKQASLANDQLRSLYSQVRPNAI ALVDAFNYTDHYLGSVLGRYDGNVYPKLYEEAWKDPLNDSVLPDGYNEYIRPMLKQQLHNARL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Potri.003G079200 [exp]	0	1	ACX1.1
AT4G30810		SCPL29	serine carboxypeptidase-like 2...		Potri.018G103100 [exp]	2.44	0.7563
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Potri.010G226700 [exp]	10.09	0.6734
AT4G32272			Nucleotide/sugar transporter f...		Potri.018G026600 [exp]	10.19	0.6545
AT3G55290			NAD(P)-binding Rossmann-fold s...		Potri.016G035200 [exp]	12.08	0.7587
AT1G73920			alpha/beta-Hydrolases superfam...		Potri.012G060600 [exp]	19.62	0.6272
AT5G27760			Hypoxia-responsive family prot...		Potri.005G024500 [exp]	24.49	0.7214
AT1G72810			Pyridoxal-5'-phosphate-depende...		Potri.001G199100 [exp]	37.10	0.6246
AT1G73480			alpha/beta-Hydrolases superfam...		Potri.015G031900 [exp]	42.28	0.7054
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Potri.003G072600 [exp]	49.31	0.6711
AT5G10780			unknown protein		Potri.018G016800 [exp]	55.47	0.5840

Compare expression of checked genes

Potri.003G079200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.