Plant FIBer expression Database

Potri.003G079400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G17430 585 / 0 O-fucosyltransferase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040182
[exp]
606 / 0 AT4G17430 509 / 5e-178 O-fucosyltransferase family protein (.1)
Lus10004385
[exp]
603 / 0 AT4G17430 503 / 8e-174 O-fucosyltransferase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0113 GT-B PF10250 O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence
>Potri.003G079400.1 pacid=42785740 polypeptide=Potri.003G079400.1.p locus=Potri.003G079400 ID=Potri.003G079400.1.v4.1 annot-version=v4.1
ATGAAGAATGCTGCCTTCAATCTTGACAAAAACACAACAAAACCATCATCATGGATCAAGAAAAAACAAACACAACCTCTCAAATCTCCGCTTTCTCTCT
TACTAATTCTCTCTCTCTTCCTCTTTATTTTCCTTTTCATCTCCTTCTTTAAAATAACCCCCAATTCACTTTTCTCCAAAACCATTACAAATAATCCTCT
AATCTCGCAATGCACCAAATTCCAAACCCTAGCCCTAGGAGAGAAGTTCCTATGGTATGCACCACACAGTGGGTTCAGCAACCAGTTATCAGAGTTCAAG
AATGGGATTTTAATGGCTGGGATTTTGAATAGAACCTTAATTGTGCCTCCTGTTCTTGATCACCACGCTGTTGCTCTTGGTAGTTGCCCTAAATTTAGGG
TTTTGGGACCTAAAGAGATTAGGGTTTCAGTTTGGGATCACGTTCTTGACCTTGTTAAGACTGGCAGGTATGTCTCTATGGCCGATATCATTGATATTTC
GTCTCTGGTACCTTCTTCCATTCAAGCGATAGATTTCAGGGTTTTTGCATCGCAATGGTGCAATGTGAAAATGGATTTCACCTGTTCAAATGATTTAAAT
GCTCAGTCTTCTTTGTTTGATAGCCTCAACCTGTGTGGATCTATACTGTCCGGGATTGATGGTAATGTAGACAAGTGTTTATATGCTGTAGATGAAGATT
GCAGAACCACTGTTTGGACTTATAAGAATGGTGACGAGGACAGAGTGTTTGATTCATTTCAACCTGATGAACAGCTAAAGAAGAAAAAGAAAATTTCATA
TGTTAGGAGACGCCAGGATGTATACAAGAGCCTTGGACCTGGTTCTGAAGCTGGATCAGCCACTGTCCTCGCATTTGGAAGTCTTTTCACTGCTCCATAC
AAAGGTTCGGAGCTCCATATTGATATCCATGAAGCACGAAGGGATCAAAGGATACAATCTTTGATTGACAACAGTGAATTTCTTCCTTTTGTCCCTGAAA
TCCTAAATGCAGGGAAGAAGTTTGCTTTAGAGACCATAAAGGCTCCTTTTCTTTGCGCGCAGCTCAGGTTGTTGGATGGACAGTTTAAGAACCACTGGAA
GGCTACATTTCAGGGCTTAAAACAAAAGCTAGAAGTTTTAAAGCAGAGTGGATCTAAACCTATACATATTTTTGTAATGACTGATCTTCCTCAAGGTAAT
TGGACCGGAAGTTTCTTGGGGGACATGGCTAGTGAGGTTAACCATTTTAAGCTATACTTTTTGAGAGAAGAAGATGAGTTGGTCAAGAAAACAGCAAAGA
ATCTTGCGGTTGCTGGGCATGGCCTGAGGTTTGGATCTGTTCCGAGGAGTCATAATGGAGAGAGCAAGATGAAGATGAATTGTCCACATCAGAGGTTAAT
CGACATACTTTTGTACATAGAGAAAAGTGTTTGTAGCTGTGCTTCCCTTGGTTTTGTTGGGACTGCTGGGTCAACTATTGCCGAGAGTATAGAGTTGATG
AGGAAATCTGATGTATGTTCTAAGTCCTAG
AA sequence
>Potri.003G079400.1 pacid=42785740 polypeptide=Potri.003G079400.1.p locus=Potri.003G079400 ID=Potri.003G079400.1.v4.1 annot-version=v4.1
MKNAAFNLDKNTTKPSSWIKKKQTQPLKSPLSLLLILSLFLFIFLFISFFKITPNSLFSKTITNNPLISQCTKFQTLALGEKFLWYAPHSGFSNQLSEFK
NGILMAGILNRTLIVPPVLDHHAVALGSCPKFRVLGPKEIRVSVWDHVLDLVKTGRYVSMADIIDISSLVPSSIQAIDFRVFASQWCNVKMDFTCSNDLN
AQSSLFDSLNLCGSILSGIDGNVDKCLYAVDEDCRTTVWTYKNGDEDRVFDSFQPDEQLKKKKKISYVRRRQDVYKSLGPGSEAGSATVLAFGSLFTAPY
KGSELHIDIHEARRDQRIQSLIDNSEFLPFVPEILNAGKKFALETIKAPFLCAQLRLLDGQFKNHWKATFQGLKQKLEVLKQSGSKPIHIFVMTDLPQGN
WTGSFLGDMASEVNHFKLYFLREEDELVKKTAKNLAVAGHGLRFGSVPRSHNGESKMKMNCPHQRLIDILLYIEKSVCSCASLGFVGTAGSTIAESIELM
RKSDVCSKS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G17430 O-fucosyltransferase family pr... Potri.003G079400
[exp]
0 1
AT5G23200 unknown protein Potri.005G092000
[exp]
4.35 0.8205
AT5G41760 Nucleotide-sugar transporter f... Potri.001G094600
[exp]
15.49 0.7861
AT2G37300 ABCI16 ATP-binding cassette I16, unkn... Potri.006G216300
[exp]
16.06 0.7722
AT1G78790 unknown protein Potri.012G090600
[exp]
21.86 0.7937
AT1G47840 HXK3 hexokinase 3 (.1) Potri.005G238600
[exp]
22.91 0.7569
AT3G22190 IQD5 IQ-domain 5 (.1.2) Potri.001G215200
[exp]
24.00 0.7278
AT4G20280 TAF11 TBP-associated factor 11 (.1) Potri.001G073500
[exp]
31.81 0.7513
Potri.006G071700
[exp]
33.98 0.7345
AT3G05100 S-adenosyl-L-methionine-depend... Potri.005G046300
[exp]
38.07 0.7265
AT1G66170 MMD1 MALE MEIOCYTE DEATH 1, RING/FY... Potri.017G135200
[exp]
53.17 0.6956

Potri.003G079400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.