Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39810 928 / 0 HOS1 HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, ubiquitin-protein ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G155200 [exp] 1587 / 0 AT2G39810 961 / 0.0 HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, ubiquitin-protein ligases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010990 [exp] 970 / 0 AT2G39810 868 / 0.0 HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, ubiquitin-protein ligases (.1) Lus10007854 [exp] 725 / 0 AT2G39810 652 / 0.0 HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, ubiquitin-protein ligases (.1) Lus10000423 [exp] 170 / 8e-43 AT1G27180 338 / 5e-95 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13934 [poplar] [flax] ELYS Nuclear pore complex assembly
Representative CDS sequence Show only first row Show all	>Potri.003G079700.1 pacid=42787405 polypeptide=Potri.003G079700.1.p locus=Potri.003G079700 ID=Potri.003G079700.1.v4.1 annot-version=v4.1 ATGGAGCGAAACCAAATGAACGGTCGTGTTTCACCTTCTAGCTCCACCGACTGCGGCGGCACGGCAAGATTCACGGCTTCCCTTTCTCAACCTAACTACA GCAGCCGAGCAGTTCAAGAAGCATTGGAACACTTGGCATCTATTGATTTAATTGAATTATGCAGTGAAGCAAAAGTTGAGCGTTGTCGAGCAACTAGAGA TTTGAGAAGTTGTGGGCGCTATGTTCAGTATGTGTTGAACTCATGCAGCCATGCTTCCTTATGCTCTGAGTGTAGTCAGCGGTGTGATATTTGCCCCATT TGTAGAATCCCTATCCCAAAGACTGGAATTAGGCTCCGTCCTCGCCTTTACTATGAATGCATAGAGTCTGGCCTTGTTTCCAAAAGATGCGATGAAAGAT TTCAAGAGAAAGAAGATGCAGACAATGAATTAACTACTGATGTCCAGCGGCTCTATTCTTTATTTGATGTTGCCTTGGAAAATAACTTGGTTTCTTTGAT TTGTCACTATGTTACAGATGTTTGTATGGATGAAAGTGCTGTGTCCAGTGATCCTGTCATTGCTTTCTTGTTGGATGAAGTGGTTGTCAAGGATTGGTGC AAGCGGACGTTTAAAAACATCATAGCAGAACTTCAAGGGATATATAACCTTGAAACAGAAGAAATGAAAACTAGGTTGAGTTTACTTCTTAAACTTTCTG TGCATCTGGTTGGAATATCCAATGTTCTTGAAGTTTTGGAATTGTCATTTAAGGATAGTCTTTCAGCACAGCTTCATGACTTGCAGCTCCTTCAAGAGAA CATATTAAAGGCGAAGCAGCATATGGAGATTATAGCATGGTGTGTAAGACATCACTTTCTGGAGAATGTGGGGTCTCGTTACAGCAATTTATCATCATGG CGTAGTGTTGTCCTTGAAAGGAAATCAGCTGCAATTAAGCGTTCATGGCCTGATGTACCAAATCAATCTGCTGAGTCCAGCATGCAGGCTGGTTCCCTGT TCATTGAAGATGCTCTCGCCAATCTTGAAATAGATCAGGGCCATATGCAAGAAAAGGGAGAAGAGTCAGAACTTGCATTATTGCTGAAGGATGGAAGGTT GTTTTTCAGGTCTAAGCTAGAGGGTTTGGCAGTATGCTATCCATTTGAAAATCTCCGAGCTGCTGCTGATGTACTTTTTTTACATGGAAGTTCTGATTTG TTGCTTGCAAAGCAGGCAATTTTTCTTTATTATCTTTTTGATCGACATTGGGCAATGCCAGATGAAAGTTGGCGACATATTGCAGATGACTTTTCAGCTG CATTTGGTATAACCAGGCATTCATTATTGGAATCACTTACTTTCTATCTTCTGGATGATCACACAGAAGCAGCTCTGCAGGAAGCTTGCAACCTTCTTCC TGAGATTTCAGGCCCATCAACTCATCCTAAGATTGCTCAAGTGCTATTAGAAAGGAAGAATCCTGAAACAGCACTGATGGTCTTAAGATGGTCTGGGCAT GATGGATCTCAAATGGTTTCTCTCAATGATGCTGTTACTGCTGTTCGGATTAGGGTGCAGTGTGCGCTTTTGACTGAAGCATTTATGCATCAGAGAATGC TCTGCACCAAAGTCAGGGAAAATAAGTTCAAGGCTAGACCACCTCGAGATGCTTCTGATGATCTTAAAGGCGAATGCAGGACCTGGGAAAACTGGGTGGA GATACTGGTGAATGAAATTTGTTATCTTTGTATCAAGAACAATCTGGTAGATCGAATGATATCATTGCCATGGAATTTGGATGAAGAGAAATATCTTCAT AACTGTCTCTTAGATTATGCTTTCCATGACCCTTCAACAACTATTGGAAGTCTTCTTGTCGTATTTTATCTCCAGCGCTACAGATATGTGGAGGCATACC ATGTTCATTCCAAACTTCAGGGTGTGGAGCAGGAGTTCATTTCTAAGAATTCTCTCAGTGAAGAAGTTTTATCCAGAATGAGATCAGCTAGTCACCACAG AGGAGAACTTGCTGTTCAATCCATTAAGTTGCTTCCAAAAATTCAACAGGAACAGCTTAAGACTGGAAAATTGTCACCCGAGATCCGTAATACCTCTGGT GAAGAAGTTGAAATTCAAGAAAGGGCTGATCTTCCCTTGGCACAAGAGCCAAAGTCAAGCAGTTTATTAATTTCCCTGCCCGCAGATTCTTCTCTGGTTT CTCAGACAAATAATAATGTTACTGTTAAACCAGCAGCTCTTAAAACTCCACCAAGATTTGGTGCATCTATCAAGAGTCCTCACCTGGAAATGGGTAACTG TGACTCTTCATCTGTTCTTCATCAAAGGTTATTTAGAACTCCAGAAAGAACTCAAAAGTATCAAGTTAGTTTCAACAAAAATTTCAAATTTGATGGCATC TCAACTCCTGGAATTCATCAAGGTAGTCACATGAAAACCACGCCATTAAAGGAGACCAGCAGAACTTCATTAGAAGTGCTTCCGAACAGCAACCTGCACC ACAGTCTATTCGATGAAATCTCTCCAGAAAGGGAACAAAATGGGTTTCCTAAGCAATTACGAAACACAACTCCTCCATATTCCCATAGGATTACTGCTAA TCCAGTGGCTATGTCTGGCAGCAACAATGGTCTTCCTAATGATAAAAATGATAGATCTAGGAATAAGGGTTCTATAGGTGATCCAAAGGACATAGCTTGG AGTGATAGAGAGGAGTTCATTGTTGATGAAAGGGAGGTGAATGATGGGCTGAGATGGAGAAGTGATGAAACTAGTGATGAAGAAGAAGAGCATATTCCAG AGAGAATTGTTGGAGTTGATTCGTATGCAGCAACCAGTAGGAGAGTTAGGAAAAGTAGATTTGCTAGAAGATGA
AA sequence Show only first row Show all	>Potri.003G079700.1 pacid=42787405 polypeptide=Potri.003G079700.1.p locus=Potri.003G079700 ID=Potri.003G079700.1.v4.1 annot-version=v4.1 MERNQMNGRVSPSSSTDCGGTARFTASLSQPNYSSRAVQEALEHLASIDLIELCSEAKVERCRATRDLRSCGRYVQYVLNSCSHASLCSECSQRCDICPI CRIPIPKTGIRLRPRLYYECIESGLVSKRCDERFQEKEDADNELTTDVQRLYSLFDVALENNLVSLICHYVTDVCMDESAVSSDPVIAFLLDEVVVKDWC KRTFKNIIAELQGIYNLETEEMKTRLSLLLKLSVHLVGISNVLEVLELSFKDSLSAQLHDLQLLQENILKAKQHMEIIAWCVRHHFLENVGSRYSNLSSW RSVVLERKSAAIKRSWPDVPNQSAESSMQAGSLFIEDALANLEIDQGHMQEKGEESELALLLKDGRLFFRSKLEGLAVCYPFENLRAAADVLFLHGSSDL LLAKQAIFLYYLFDRHWAMPDESWRHIADDFSAAFGITRHSLLESLTFYLLDDHTEAALQEACNLLPEISGPSTHPKIAQVLLERKNPETALMVLRWSGH DGSQMVSLNDAVTAVRIRVQCALLTEAFMHQRMLCTKVRENKFKARPPRDASDDLKGECRTWENWVEILVNEICYLCIKNNLVDRMISLPWNLDEEKYLH NCLLDYAFHDPSTTIGSLLVVFYLQRYRYVEAYHVHSKLQGVEQEFISKNSLSEEVLSRMRSASHHRGELAVQSIKLLPKIQQEQLKTGKLSPEIRNTSG EEVEIQERADLPLAQEPKSSSLLISLPADSSLVSQTNNNVTVKPAALKTPPRFGASIKSPHLEMGNCDSSSVLHQRLFRTPERTQKYQVSFNKNFKFDGI STPGIHQGSHMKTTPLKETSRTSLEVLPNSNLHHSLFDEISPEREQNGFPKQLRNTTPPYSHRITANPVAMSGSNNGLPNDKNDRSRNKGSIGDPKDIAW SDREEFIVDEREVNDGLRWRSDETSDEEEEHIPERIVGVDSYAATSRRVRKSRFARR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Potri.003G079700 [exp]	0	1
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.017G009900 [exp]	1.73	0.7975
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Potri.001G255400 [exp]	3.00	0.8153
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Potri.011G055500 [exp]	6.63	0.7994
AT5G36930			Disease resistance protein (TI...		Potri.005G206400 [exp]	8.06	0.7678
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Potri.019G033000 [exp]	9.38	0.7940
AT1G11820			O-Glycosyl hydrolases family 1...		Potri.011G006100 [exp]	9.74	0.7940
AT2G40270			Protein kinase family protein ...		Potri.010G185300 [exp]	11.35	0.7261
AT4G13990			Exostosin family protein (.1)		Potri.001G321000 [exp]	11.61	0.7819
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.008G171700 [exp]	12.96	0.7879
AT2G44150		SDG7, ASHH3	SET DOMAIN-CONTAINING PROTEIN ...		Potri.017G000400 [exp]	12.96	0.7440

Compare expression of checked genes

Potri.003G079700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.