Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HAT1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16780 320 / 8e-110 HD ATHB2, HAT4, ATHB-2 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) AT5G47370 300 / 6e-102 HD HAT2 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT4G17460 283 / 4e-95 HD HAT1 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT3G60390 259 / 2e-85 HD HAT3 homeobox-leucine zipper protein 3 (.1) AT2G44910 244 / 1e-79 HD ATHB4, ATHB-4 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, homeobox-leucine zipper protein 4 (.1) AT5G06710 215 / 5e-68 HD HAT14 homeobox from Arabidopsis thaliana (.1.2) AT4G37790 197 / 7e-62 HD HAT22 Homeobox-leucine zipper protein family (.1) AT2G22800 192 / 8e-60 HD HAT9 Homeobox-leucine zipper protein family (.1) AT2G01430 154 / 3e-45 HD ATHB17, ATHB-17 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, homeobox-leucine zipper protein 17 (.1) AT1G70920 133 / 1e-37 HD ATHB18 homeobox-leucine zipper protein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G155100 [exp] 513 / 0 AT4G16780 335 / 6e-116 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.014G045100 [exp] 286 / 2e-96 AT3G60390 263 / 5e-87 homeobox-leucine zipper protein 3 (.1) Potri.002G136400 [exp] 282 / 8e-95 AT3G60390 285 / 5e-96 homeobox-leucine zipper protein 3 (.1) Potri.006G193700 [exp] 223 / 3e-71 AT5G06710 251 / 1e-81 homeobox from Arabidopsis thaliana (.1.2) Potri.016G059000 [exp] 220 / 1e-69 AT5G06710 241 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.001G229700 [exp] 217 / 2e-68 AT5G06710 269 / 4e-88 homeobox from Arabidopsis thaliana (.1.2) Potri.016G058600 [exp] 210 / 9e-68 AT5G06710 239 / 9e-79 homeobox from Arabidopsis thaliana (.1.2) Potri.009G023600 [exp] 214 / 5e-67 AT5G06710 243 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.005G147100 [exp] 209 / 5e-66 AT4G37790 270 / 1e-90 Homeobox-leucine zipper protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004759 [exp] 328 / 2e-112 AT4G16780 305 / 1e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10007849 [exp] 318 / 1e-108 AT4G16780 303 / 6e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10040175 [exp] 286 / 5e-96 AT4G16780 280 / 1e-93 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10004377 [exp] 258 / 6e-85 AT4G16780 265 / 1e-87 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10016254 [exp] 219 / 5e-69 AT5G06710 274 / 4e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10021064 [exp] 213 / 4e-68 AT5G06710 265 / 3e-88 homeobox from Arabidopsis thaliana (.1.2) Lus10029293 [exp] 214 / 3e-67 AT5G06710 274 / 5e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10004161 [exp] 210 / 8e-66 AT5G06710 263 / 5e-86 homeobox from Arabidopsis thaliana (.1.2) Lus10019256 [exp] 151 / 1e-44 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1) Lus10011569 [exp] 145 / 5e-42 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0123 [poplar] [flax] PF02183 [poplar] [flax] HALZ Homeobox associated leucine zipper CL0123 [poplar] [flax] PF04618 [poplar] [flax] HD-ZIP_N HD-ZIP protein N terminus
Representative CDS sequence Show only first row Show all	>Potri.003G079800.3 pacid=42786835 polypeptide=Potri.003G079800.3.p locus=Potri.003G079800 ID=Potri.003G079800.3.v4.1 annot-version=v4.1 ATGATGATGGCTGAGAAGGAAGATCTGGGTTTGAGTTTAAGTCTCAGTGTTCCTCAAAATCAGCATTCTCTGCAGTTTAATCTCATGCCTTCACTGGTTC CATCTACTGCTGCTTCTTCTCTTTCTGGGTTCAATCCTCAAAAACCCTCATGGAATGCGACCTTCCCTCCTTCAGATCAAAACTCTGATCCATACCGCGC CGAGACCAGATCGTTCCTTCGAGGAATCGACGTGAACAGGTTACCATCTACAGCTGATTGTGAAGAGGAGGCAGGTGTATCGTCTCCAAATAGCACGATA TCGAGTATAAGTGGAAAGAGAAGCGAAAGAGAAGGGATTAACGGAGAGGAGCATGAGATGGAGAGAGATTATTCTCGTGGAATCAGTGATGAAGAGGATG GTGATACCTCGAGAAAGAAGCTCAGGCTCTCTAAAGATCAGGCAGCTATTCTTGAAGAAAGTTTTAAAGAACACAACACTCTCAACCCAAAGCAGAAGAT GGCCTTGGCTAAACAGCTAGGACTCCGACCTAGACAAGTGGAGGTGTGGTTTCAGAACCGAAGGGCAAGGACAAAGCTGAAGCAAACTGAGGTTGACTGT GAGTTCTTGAAGAGGTGCTGTGAGAACCTAACGGCGGAGAACAGGAGGTTGCAAAAGGAAGTTCAGGAGCTCAGAGCACTGAAACTTTCCCCGCAGTTCT ACATGCAAATGACCCCACCAACCACCCTCACCATGTGCCCATCATGTGAGCGTGTAGCGGTCCCACCGTCCGCATCATCCACCGTTGATGCTAGGTCCCA TCCCCATATGGGCCCCACTCCTCCTCATCACAGGCCCATCCCCATCAACCCATGGGCCCCAGCCGCACCAATCACACGTGGACCGACTCCGTTTGATGTA CTACGTCCTAGATCGTAA
AA sequence Show only first row Show all	>Potri.003G079800.3 pacid=42786835 polypeptide=Potri.003G079800.3.p locus=Potri.003G079800 ID=Potri.003G079800.3.v4.1 annot-version=v4.1 MMMAEKEDLGLSLSLSVPQNQHSLQFNLMPSLVPSTAASSLSGFNPQKPSWNATFPPSDQNSDPYRAETRSFLRGIDVNRLPSTADCEEEAGVSSPNSTI SSISGKRSEREGINGEEHEMERDYSRGISDEEDGDTSRKKLRLSKDQAAILEESFKEHNTLNPKQKMALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDC EFLKRCCENLTAENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPPSASSTVDARSHPHMGPTPPHHRPIPINPWAPAAPITRGPTPFDV LRPRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.003G079800 [exp]	0	1	HAT1.4
AT5G45200			Disease resistance protein (TI...		Potri.019G070350 [exp]	4.24	0.7454
AT1G47750		PEX11A	peroxin 11A (.1)		Potri.002G134000 [exp]	4.24	0.7741
AT3G11420			Protein of unknown function (D...		Potri.008G058900 [exp]	18.38	0.6939
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.006G027600 [exp]	31.38	0.7156
AT3G52260			Pseudouridine synthase family ...		Potri.008G042000 [exp]	33.49	0.6890
					Potri.015G114501 [exp]	34.49	0.6927
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.001G155100 [exp]	36.00	0.6654	HAT1.3
AT1G48320			Thioesterase superfamily prote...		Potri.010G003800 [exp]	42.24	0.6575
AT3G22440			FRIGIDA-like protein (.1)		Potri.008G153000 [exp]	44.28	0.6565
AT2G21120			Protein of unknown function (D...		Potri.019G001100 [exp]	45.56	0.6958

Compare expression of checked genes

Potri.003G079800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.