Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35680 385 / 2e-134 Phosphotyrosine protein phosphatases superfamily protein (.1) AT5G56610 270 / 1e-90 Phosphotyrosine protein phosphatases superfamily protein (.1.2) AT3G23610 47 / 4e-06 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT3G10940 47 / 8e-06 LSF2 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) AT3G06110 40 / 0.0004 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G154700 [exp] 586 / 0 AT2G35680 379 / 1e-131 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.014G045500 [exp] 385 / 2e-134 AT2G35680 360 / 2e-124 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.002G136700 [exp] 380 / 2e-132 AT2G35680 350 / 1e-120 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.010G033000 [exp] 47 / 4e-06 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.008G020500 [exp] 41 / 0.0009 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004376 [exp] 431 / 2e-152 AT2G35680 367 / 3e-127 Phosphotyrosine protein phosphatases superfamily protein (.1) Lus10040174 [exp] 425 / 5e-150 AT2G35680 369 / 5e-128 Phosphotyrosine protein phosphatases superfamily protein (.1) Lus10012928 [exp] 305 / 3e-103 AT5G56610 294 / 5e-99 Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10034998 [exp] 245 / 3e-80 AT5G56610 247 / 1e-82 Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10021940 [exp] 51 / 2e-07 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10034214 [exp] 46 / 2e-05 AT3G10940 405 / 5e-144 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Lus10029052 [exp] 46 / 2e-05 AT3G10940 394 / 2e-139 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Lus10034033 [exp] 41 / 0.0002 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF00782 [poplar] [flax] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.003G080000.2 pacid=42785419 polypeptide=Potri.003G080000.2.p locus=Potri.003G080000 ID=Potri.003G080000.2.v4.1 annot-version=v4.1 ATGATAATTGAGGAATTGAGAGTAGGCGAGGTGGAGAGAGGGGAGGAGGAGAAGGAATTGCGTGCTGTGGGTGCTAATAAGAAGGAGAGTGAAGGCGTTA TTGCGTGGAATGCAAAACGGGTTTTTATTGGAGCTGGAGCTCGGGCTTTGTTTTACCCAACTTTGCTTTATAATGTTGTTAGGAATAAGGTCCAGGCTGA GTTTCGCTGGTGGGATAGAGTTCATGAGTTTATATTGTTAGGTGCTGTTCCATTCCCTTCTGATGTTCCATGCCTGAAGGGGCTTGGTGTTGGTGGTGTG ATAACACTGAATGAACCATATGAGACGCTAGTGCCAACTTCTTTATACCATGCTTATGGCATTGATCATCTGGTGATCCCCACGAGAGACTACTGCTTTG CTCCGTCCTTAAATGATATATGCCAAGCTGTAGCCTTCATTCATGAAAATGTATCATCAGGACGAACTACATATGTTCATTGCAAAGCAGGACGGGGACG CAGCACAACAATTGTTATATGCTACCTGGTGCACCACATGCAGATGACACCTAATGCTGCATATAATTATGTGAGGTCAATCCGACCAAGAGTGCTTCTA GCATCTGCGCAATGGCAGGCTGTTCAGGAATATTATTATCTAAAGGTGGACACTAGCGATCACAACTTCAAATTGGCTGATTTAGTTTTTAGAACTCCAA GGCCAGCACTTCTGCAGGGTATAGTGCCATTTGATGATGGCTCTGTAGTTGTTGTAACAGAAGCAGATCTTGATGGATATAATCCAAGTATTGAATCTGG GCCTGTGGGAAGTGAGATATGGGCTGACCTAAGTGTTGTCTGCCGTGTTCGAGTTGCTGGTCAGGCAGCTCTGGCAAGAATATCCTGCCTCTGGCTCCGC TGCCAGGCTCACCAAAAGATTGTTGGGGAGCAGTTAAACAGGAAGAACAGCTGCTCAATCAGGGCGGATCACTTGGGAGCTATCAGTGTCGACATTCATG TGTATTGA
AA sequence Show only first row Show all	>Potri.003G080000.2 pacid=42785419 polypeptide=Potri.003G080000.2.p locus=Potri.003G080000 ID=Potri.003G080000.2.v4.1 annot-version=v4.1 MIIEELRVGEVERGEEEKELRAVGANKKESEGVIAWNAKRVFIGAGARALFYPTLLYNVVRNKVQAEFRWWDRVHEFILLGAVPFPSDVPCLKGLGVGGV ITLNEPYETLVPTSLYHAYGIDHLVIPTRDYCFAPSLNDICQAVAFIHENVSSGRTTYVHCKAGRGRSTTIVICYLVHHMQMTPNAAYNYVRSIRPRVLL ASAQWQAVQEYYYLKVDTSDHNFKLADLVFRTPRPALLQGIVPFDDGSVVVVTEADLDGYNPSIESGPVGSEIWADLSVVCRVRVAGQAALARISCLWLR CQAHQKIVGEQLNRKNSCSIRADHLGAISVDIHVY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35680			Phosphotyrosine protein phosph...		Potri.003G080000 [exp]	0	1
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Potri.001G327300 [exp]	3.00	0.6827
AT2G04520			Nucleic acid-binding, OB-fold-...		Potri.002G219200 [exp]	4.58	0.6199
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Potri.002G170100 [exp]	7.34	0.5852
AT1G69340			appr-1-p processing enzyme fam...		Potri.010G161500 [exp]	16.27	0.6031
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G071900 [exp]	17.60	0.6482
AT5G66930			unknown protein		Potri.007G037800 [exp]	19.18	0.6074
AT1G16180			Serinc-domain containing serin...		Potri.003G186500 [exp]	19.39	0.5875
AT1G11200			Protein of unknown function (D...		Potri.004G035900 [exp]	21.49	0.5538
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Potri.008G102800 [exp]	28.98	0.5479	GAL1.2
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Potri.006G100900 [exp]	34.58	0.5746

Compare expression of checked genes

Potri.003G080000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.