Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60340 434 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G47330 399 / 3e-139 alpha/beta-Hydrolases superfamily protein (.1) AT4G17483 367 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) AT5G47340 355 / 8e-122 alpha/beta-Hydrolases superfamily protein (.1) AT4G17470 353 / 2e-121 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT4G17480 353 / 4e-121 alpha/beta-Hydrolases superfamily protein (.1) AT5G47350 330 / 4e-112 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G154600 [exp] 618 / 0 AT3G60340 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G137200 [exp] 432 / 8e-152 AT3G60340 462 / 2e-164 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040173 [exp] 445 / 5e-157 AT3G60340 409 / 4e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10004375 [exp] 444 / 1e-156 AT3G60340 411 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042902 [exp] 427 / 1e-149 AT3G60340 442 / 2e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028200 [exp] 425 / 2e-148 AT3G60340 439 / 3e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10004757 [exp] 342 / 3e-112 AT5G47330 337 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF02089 [poplar] [flax] Palm_thioest Palmitoyl protein thioesterase
Representative CDS sequence Show only first row Show all	>Potri.003G080100.1 pacid=42784853 polypeptide=Potri.003G080100.1.p locus=Potri.003G080100 ID=Potri.003G080100.1.v4.1 annot-version=v4.1 ATGTTTTTAGCTTTCTTCTACCTATCCTTATCCTCCCCTTCAAACTCTTCTTCCCCGGAACTTCAACTTGTTTCAAAAGTTCCTGGAGCAGCTAAAAAAC AAAACAGAAATCCCACCATTTACATCATGCCTTTTCACTGTCCTTGTATTGTCTTTCTCTTCATTGTTTTGATTTTTGTAATCAGACCTGTTGCACATTC CTTGCCCTTTATAGTTCTTCATGGCATTGGAGATCAATGCAAGAATCGAGGAGTAAAACATTTCACTGAGGAACTGACAAGCATTTCTGGGTCTCCAGGA TATTGCTTAGAAATTGGGGATGGAGCGTGGGATTCCTGGTTTATGCCTCTTGAGGAGCAGACAGAAATTGTTTGTGACAAGATCAAGAAAATGAAAGAAT TGAGCAAGGGCTACAACATAGTTGGTCTCTCCCAGGGCAACTTAATTGGTCGAGGTGTGGTAGAGTTTTGTGATGGTGGACCTCCTGTTAAGAATTTCAT TTCTTTAGGGGGACCACATGCTGGCACTGCCTCTGTTCCTCTTTGTGGGTCTGGCATTTTTTGCATACTTGCAGATGCCCTAATGAAGTCTGAGATCTAT AGCGACTATGTCCAGGCTCACCTGGCTCCCAGTGGCTATCTTAAATTTCCTAATGATATTCCACGCTACTTAGAGAAATGCAGGTTTCTTCCGAAGCTTA ACAATGAAATTCCTGAGGGAAGGAACACAACTTACAAGGAAAGGTTCTCTAGCTTGCAAAATTTGGTGCTTATTATGTTCGAAAATGACAGTATTTTGAT ACCCAAGGAGACATCGTGGTTCGGATATTATCCAGACGGGGCTTTCAAGCCAATTGTCCCAGCAAAAGAGACAAAGCTTTACACCGAGGACTGGATTGGT CTCAGGACCTTAGACGAGGCTGGAAGAGTTCATTTCGTTAATGTGTCAGGAGGTCATCTTGGAATTTCTAAGAGCGATTTGAAAAAGCATGTTGTGCCTT TCTTGGTGGATGAAGCTTCAGTAAAAAAGTATAGCAATGCCAGGGTGCATAGACTTCCAGGCACAATCACACAAAACTACCATAGGAAACAAGTTGCGGG CAGCTTTAATGACGGAACACCTTCAGTAAAAGACATTTTCAGGGAACTAGTTGGTCTTGAAGAGGAGAATGATTCAGATTGA
AA sequence Show only first row Show all	>Potri.003G080100.1 pacid=42784853 polypeptide=Potri.003G080100.1.p locus=Potri.003G080100 ID=Potri.003G080100.1.v4.1 annot-version=v4.1 MFLAFFYLSLSSPSNSSSPELQLVSKVPGAAKKQNRNPTIYIMPFHCPCIVFLFIVLIFVIRPVAHSLPFIVLHGIGDQCKNRGVKHFTEELTSISGSPG YCLEIGDGAWDSWFMPLEEQTEIVCDKIKKMKELSKGYNIVGLSQGNLIGRGVVEFCDGGPPVKNFISLGGPHAGTASVPLCGSGIFCILADALMKSEIY SDYVQAHLAPSGYLKFPNDIPRYLEKCRFLPKLNNEIPEGRNTTYKERFSSLQNLVLIMFENDSILIPKETSWFGYYPDGAFKPIVPAKETKLYTEDWIG LRTLDEAGRVHFVNVSGGHLGISKSDLKKHVVPFLVDEASVKKYSNARVHRLPGTITQNYHRKQVAGSFNDGTPSVKDIFRELVGLEEENDSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60340			alpha/beta-Hydrolases superfam...		Potri.003G080100 [exp]	0	1
AT5G35080			unknown protein		Potri.006G061600 [exp]	2.23	0.7475
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.014G106200 [exp]	14.42	0.7366	Pt-MTP1.1
AT5G43150			unknown protein		Potri.002G119700 [exp]	15.77	0.7415
					Potri.001G131500 [exp]	18.24	0.7230
AT4G24530			O-fucosyltransferase family pr...		Potri.002G105800 [exp]	25.21	0.7166
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Potri.002G212400 [exp]	27.69	0.7146
AT4G16360			5'-AMP-activated protein kinas...		Potri.016G006400 [exp]	30.75	0.6895
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Potri.002G117800 [exp]	40.89	0.7251
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Potri.017G056201 [exp]	45.13	0.7262
AT3G49880			glycosyl hydrolase family prot...		Potri.005G148800 [exp]	50.75	0.6843

Compare expression of checked genes

Potri.003G080100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.