Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25410 106 / 3e-26 RING/U-box superfamily protein (.1) AT5G53110 96 / 3e-22 RING/U-box superfamily protein (.1) AT2G46495 88 / 1e-19 RING/U-box superfamily protein (.1) AT2G46494 71 / 1e-13 RING/U-box superfamily protein (.1) AT5G36001 64 / 2e-11 RING/U-box superfamily protein (.1.2) AT1G28040 54 / 3e-08 RING/U-box superfamily protein (.1) AT1G18390 47 / 1e-05 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G154500 [exp] 387 / 9e-137 AT2G25410 121 / 5e-32 RING/U-box superfamily protein (.1) Potri.002G170300 [exp] 113 / 9e-29 AT2G46495 317 / 4e-106 RING/U-box superfamily protein (.1) Potri.014G098200 [exp] 100 / 4e-24 AT2G46495 290 / 1e-95 RING/U-box superfamily protein (.1) Potri.015G017800 [exp] 100 / 6e-24 AT5G53110 389 / 1e-134 RING/U-box superfamily protein (.1) Potri.015G018200 [exp] 101 / 7e-24 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2) Potri.012G011500 [exp] 98 / 4e-23 AT5G53110 353 / 2e-120 RING/U-box superfamily protein (.1) Potri.015G018000 [exp] 95 / 1e-21 AT1G66920 355 / 2e-114 Protein kinase superfamily protein (.1.2) Potri.017G035500 [exp] 90 / 5e-20 AT1G66920 336 / 2e-107 Protein kinase superfamily protein (.1.2) Potri.007G125600 [exp] 82 / 3e-17 AT5G38260 357 / 3e-115 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007845 [exp] 168 / 1e-50 AT5G53110 79 / 9e-17 RING/U-box superfamily protein (.1) Lus10004756 [exp] 167 / 5e-50 AT5G53110 80 / 4e-17 RING/U-box superfamily protein (.1) Lus10012628 [exp] 99 / 2e-23 AT5G53110 284 / 5e-93 RING/U-box superfamily protein (.1) Lus10003401 [exp] 93 / 8e-22 AT5G53110 187 / 5e-57 RING/U-box superfamily protein (.1) Lus10014923 [exp] 92 / 1e-20 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10019018 [exp] 80 / 1e-16 AT5G53110 332 / 4e-112 RING/U-box superfamily protein (.1) Lus10010123 [exp] 69 / 8e-14 AT5G53110 114 / 1e-30 RING/U-box superfamily protein (.1) Lus10023086 [exp] 62 / 2e-10 AT5G53110 161 / 1e-59 RING/U-box superfamily protein (.1) Lus10032382 [exp] 60 / 6e-10 AT5G53110 237 / 1e-74 RING/U-box superfamily protein (.1) Lus10025553 [exp] 58 / 4e-09 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G080200.1 pacid=42785563 polypeptide=Potri.003G080200.1.p locus=Potri.003G080200 ID=Potri.003G080200.1.v4.1 annot-version=v4.1 ATGCGCAAGATCTTTCTATGTGACTTGTATAGGGGAGAAATCAGAACCAGCCAAACTGTTGTGTCTTCGTTATTACAAACAATGGATGCTTTTATGTTCT TTACTCTCTTCTCCTCCATGTTTCTAACCATAAATGCTTTTGAATCCAAATGTCCAATGGTTAAGTGCAGTCACGGCGGTCCTGATATCCGTTTCCCATT CCGAGCATTAGGCCAACAACCCCAGCACTGTGGTAATCCTGGTTTCGAACTTGTTTGCAGAGATAACACCACCATGATTCATTTCCCAACTTATGGACCC TTAGTTGTGAAATCCATCTCTTATGATATCAGAAAACTCAGTCTTCTTGACCCCAAAAGTTGTGTCCATGAAGTCTTTCTTAATCTTAACCTCTCCGGTA CACCTTTCCAGTATTACTATCTTTTGAAGAACTTTATATACCTCAATTGCTCAACCAGGCTTTCGCCTTCTTTCGATGAGGTTTCATGTTTGAGTGGTTC CAGACATCATGTTTACACAGTCGAATCTTCGTTGCCCATTCCAGTTTCTTGCAGACCATTGAAAGCTATTCCCATTCCATTTTCATACAGTCCTTATCTT GCTGATAATAGTTTTGGCCTTGAATTAACTTGGAGTATGCCTGGGCGCAAAGATTTTGAAGAACAAGTAGGCTCATGTGTGTTCCAGTCCAAAGCAGGAC CTAAATCAGGCTGTCCCAACATAACACTGGATAAAGGTTTTTCAATTGTGCATGTATTGTCAGGTGAAGCTGTGTCTATGATCTTGAACATTCTGCTATG TATTTTTGTGGTGACAACAATGATGATAAGCATAAAAATCTGTAACTCGAAGAAGGTTGATGAACAGACAGAAAATGAGAATCTACTGTAG
AA sequence Show only first row Show all	>Potri.003G080200.1 pacid=42785563 polypeptide=Potri.003G080200.1.p locus=Potri.003G080200 ID=Potri.003G080200.1.v4.1 annot-version=v4.1 MRKIFLCDLYRGEIRTSQTVVSSLLQTMDAFMFFTLFSSMFLTINAFESKCPMVKCSHGGPDIRFPFRALGQQPQHCGNPGFELVCRDNTTMIHFPTYGP LVVKSISYDIRKLSLLDPKSCVHEVFLNLNLSGTPFQYYYLLKNFIYLNCSTRLSPSFDEVSCLSGSRHHVYTVESSLPIPVSCRPLKAIPIPFSYSPYL ADNSFGLELTWSMPGRKDFEEQVGSCVFQSKAGPKSGCPNITLDKGFSIVHVLSGEAVSMILNILLCIFVVTTMMISIKICNSKKVDEQTENENLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25410			RING/U-box superfamily protein...		Potri.003G080200 [exp]	0	1
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Potri.003G204000 [exp]	1.41	0.9690
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024052 [exp]	3.87	0.9676
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G095566 [exp]	4.47	0.9565
AT4G27290			S-locus lectin protein kinase ...		Potri.011G129350 [exp]	5.47	0.9550
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023788 [exp]	6.32	0.9577
					Potri.015G140800 [exp]	10.39	0.9251
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.018G144800 [exp]	12.64	0.9444
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.001G065327 [exp]	12.84	0.9414
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096000 [exp]	13.07	0.9301
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Potri.002G236400 [exp]	13.49	0.9357	IAGLU.2

Compare expression of checked genes

Potri.003G080200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.