Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47240 402 / 9e-140 ATNUDT8 nudix hydrolase homolog 8 (.1) AT5G47650 262 / 3e-86 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) AT4G25434 243 / 1e-78 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT2G04430 229 / 7e-73 ATNUDT5 nudix hydrolase homolog 5 (.1) AT4G12720 218 / 6e-69 ATNUDX7, GFG1, AtNUDT7, NUDT7 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) AT2G04450 216 / 2e-68 ATNUDX6, ATNUDT6 nucleoside diphosphates linked to some moiety X 6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, nudix hydrolase homolog 6 (.1) AT2G04440 127 / 5e-35 MutT/nudix family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G154300 [exp] 625 / 0 AT5G47240 416 / 2e-145 nudix hydrolase homolog 8 (.1) Potri.018G069100 [exp] 333 / 5e-113 AT5G47240 316 / 3e-106 nudix hydrolase homolog 8 (.1) Potri.001G368000 [exp] 284 / 2e-94 AT5G47650 342 / 6e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.006G005400 [exp] 266 / 7e-87 AT5G47650 347 / 7e-120 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G127700 [exp] 258 / 1e-84 AT5G47650 323 / 1e-111 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.003G106100 [exp] 258 / 1e-84 AT5G47650 332 / 9e-115 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.016G006000 [exp] 259 / 3e-84 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.005G077500 [exp] 256 / 4e-83 AT5G47650 322 / 2e-110 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.014G168400 [exp] 248 / 1e-79 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040169 [exp] 436 / 2e-153 AT5G47240 409 / 7e-143 nudix hydrolase homolog 8 (.1) Lus10004371 [exp] 437 / 7e-150 AT5G47240 410 / 2e-139 nudix hydrolase homolog 8 (.1) Lus10012319 [exp] 257 / 4e-84 AT5G47650 310 / 4e-106 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10038780 [exp] 259 / 6e-84 AT5G47650 345 / 1e-118 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10039079 [exp] 258 / 1e-83 AT5G47650 345 / 3e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10006365 [exp] 254 / 3e-82 AT4G12720 300 / 1e-101 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) Lus10012320 [exp] 233 / 1e-74 AT5G47650 282 / 2e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10006366 [exp] 232 / 2e-74 AT5G47650 281 / 4e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10021278 [exp] 43 / 0.0002 AT5G06340 251 / 9e-85 nudix hydrolase homolog 27 (.1) Lus10021279 [exp] 42 / 0.0006 AT5G06340 253 / 1e-85 nudix hydrolase homolog 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF00293 [poplar] [flax] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Potri.003G080400.1 pacid=42787230 polypeptide=Potri.003G080400.1.p locus=Potri.003G080400 ID=Potri.003G080400.1.v4.1 annot-version=v4.1 ATGGAGTTGAAGTTTCTTGATTCCAAATCATCATCTTTATCTGAGAAAGCAGCCCTCGTGGCAAGGACAAAATCAAGTCCGTTTTCCAGTTTCGAACATT CAGTTGGTGTTAAATTTTCTCAAGAGTTCAGTTCTTGCAGAGGAGTATTTACGAAGGCATCTTATTTGAGTTCAAAAGGTACATTTATGCCAAAGAGGGC TATTAGCTCAGTTGACAAAGAAAAAACCGCAGCAGAGAATTACTTTTATCAGATTAGCACAAATGGTGCTGGTTCAAGTCTGTTTTCCAGAAATGTCGGA GTATTTGATGCCTGCGATGACGAGTACGGGGGAGTTGTGGTTGATCCGGATAGATTACCGGTTAATCCAGATGCCTTTGCTCCAATGCTCCAATTTTCCC TTTCACACTGGAAAATGAAGGGAAAGAAGGGAATTTGGCTCAAGCTGCCCCTGGAACGATCAGAGCTTGTTCCAGTCGCTGTGAAGGAAGGTTTTGAGTA CCACCACGCAGAACGAGGATACGTGATGCTGACTTACTGGATTCCCGAAGGACCTTGTATGCTTCCTTCTAATGCTACGCATCAAGTTGGTGTTGGGGGA TTTGTGATCAATGACAAAAATGAGGTTCTTGTAGTACAAGAGAAATTCTATGCTCCATCATTTGCCGATCTTTGGAAAATACCGACTGGTTTTATTCTCG AGTCAGAAGAGATTTACACAGGAGCTGTAAGGGAAGTCAAGGAGGAAACTGGTGTCGATACCGAGTTTGTGGAAGTCATAGCATTCAGGCATGCTCACAA TTTGGATTTTGACAAGTCAGATCTGTTCTTTGTATGTATGCTGAAACCCTTGTCAGCTCAGATTAAGGTTGATAATCTTGAAATCCAAGCAGCAAAATGG ATGCCCTTTGTTGAGTTTGTTGCGCAGCCACTAATCCAAGAAGACGGATTGTTCAAGAAAATCATTGATATTTGCCTTGCTCGTTTAGGGAAACATTACT GTGGATTATTACCTCGTCAAGTAGTTTCCAAATTTGATGGCAGGCCATCCTGCCTATACTACAATGTTCTTGACACTGGAAATGTCAACTGCAACGGCAA TTGA
AA sequence Show only first row Show all	>Potri.003G080400.1 pacid=42787230 polypeptide=Potri.003G080400.1.p locus=Potri.003G080400 ID=Potri.003G080400.1.v4.1 annot-version=v4.1 MELKFLDSKSSSLSEKAALVARTKSSPFSSFEHSVGVKFSQEFSSCRGVFTKASYLSSKGTFMPKRAISSVDKEKTAAENYFYQISTNGAGSSLFSRNVG VFDACDDEYGGVVVDPDRLPVNPDAFAPMLQFSLSHWKMKGKKGIWLKLPLERSELVPVAVKEGFEYHHAERGYVMLTYWIPEGPCMLPSNATHQVGVGG FVINDKNEVLVVQEKFYAPSFADLWKIPTGFILESEEIYTGAVREVKEETGVDTEFVEVIAFRHAHNLDFDKSDLFFVCMLKPLSAQIKVDNLEIQAAKW MPFVEFVAQPLIQEDGLFKKIIDICLARLGKHYCGLLPRQVVSKFDGRPSCLYYNVLDTGNVNCNGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Potri.003G080400 [exp]	0	1
AT5G50930			Histone superfamily protein (....		Potri.015G105900 [exp]	4.00	0.7288
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Potri.006G091800 [exp]	10.53	0.7296
AT2G38610			RNA-binding KH domain-containi...		Potri.019G132100 [exp]	14.52	0.7400
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.005G252600 [exp]	16.61	0.7146
AT3G62140			unknown protein		Potri.014G112900 [exp]	25.69	0.6719
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Potri.006G039400 [exp]	28.49	0.7063
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.006G200200 [exp]	38.79	0.6439
AT5G21040		FBX2	F-box protein 2 (.1.2)		Potri.009G157900 [exp]	48.98	0.7026
AT4G37210			Tetratricopeptide repeat (TPR)...		Potri.007G034200 [exp]	57.66	0.6178
					Potri.001G142300 [exp]	57.66	0.6572

Compare expression of checked genes

Potri.003G080400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.