Plant FIBer expression Database

Potri.003G080700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16807 117 / 2e-28 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000419
[exp]
77 / 1e-14 AT4G16807 66 / 2e-11 unknown protein
Lus10010996
[exp]
73 / 5e-14 AT4G16807 66 / 3e-12 unknown protein
Lus10010995
[exp]
42 / 0.0004 AT4G16807 54 / 1e-08 unknown protein
PFAM info
Representative CDS sequence
>Potri.003G080700.1 pacid=42785977 polypeptide=Potri.003G080700.1.p locus=Potri.003G080700 ID=Potri.003G080700.1.v4.1 annot-version=v4.1
ATGGAAAACACCTCTGATTCTGATTCTCAGGCGGTTCCTGATTCTTCTTTGCCGCTTCCTTCTGAGCCACCTGATATAAGAAACTGGTTTCCTAGTTACC
AGTATGAATCTTTTGTTTTGGATACTTATGATGTTTTTGGAGGTCCTATTCTTAAGGAAACTGACTTTGAGTGTACGAGAGATGGGTGTCTTTGCATTGA
AGAGGTAAATAAAGGTAAGGAAACAATTTCTTGCGACGCCACAAGAATCGGTAACAACAGCAGTGATGATAATCAGCATGAAGATCAGTCTTTTAATAAG
ATGCCCGATTCTTTGTGCTCATTGTCTCTCCTTTCTGAGCCTCCTGACATCAGAAACTGGTTTCCGAGCTATGAGTACGAATCTCCTGTTCTGGATACAG
CGGAATATTTTATCGAATCTGTTATTAAAGAAAGTGAAGGTGAGAAGGATGGATTTGCTATTGAAGAGAGTAAGAATAGAAGAGAAGAAAATGCTGGGGA
TTTGAGCAACTCTGGAAACAACAATGAAGTACGTGCTAATGAGAAGCCATCCTCAAATGGGTCCATTAAGTGTAAGAGTTCATTTGGAGATGTGTGTGAC
AACAAGCCTTTAAGTAAGGTTCCAGATTCTTCTCAATCATCCTCATTCCTTTCTGAGCCACCTGACATAAGGAACTGGTTCCCCAGCTACGTGTATGAAT
CTCCTGCACTGGGTGAAAGCGTTGGATTTCTTCATGACAAAACTGAACGCGAGGGAGATGATTTTGCTAATCAAGACAGCAAGAGAGATAAAGAAACGAA
TTCATGGAAATTAGGACAAAACAGAAGTTCAGATGAAATTGAACACTCAAATGGATTTTTGAAGTTCAATAGCTCCTTAGGAGAACATAAACAGGAAAAA
TTATTGAATAAGGTTTCTCCCTCTCAGGACTCTTGGGATGTAGAGAAAGAGGGCTCATCTATTCTGGATAATCTGCACCATGAAGGGGAGCTTAGCATGG
AAGATGAATCAGTTCTGAGCCATGCTATTGTTCCAACCAAAGATGTTGAGAAACCAAGCTTGAGGTTAGAAGTGCCTCCATTTAAACAGCCACAGATGCA
AAATCTAGTGCAAGAAGTTGGTTTTATGTCAGTCACGAGTAATGTAAGATCAAGCGATAAATCTGCAACAAGGTTGAACTGCAGGAAGGATTCCGCAGAA
AACTTGGTTAAAGCTCAAACAGAAATTGATCTCGTATCACCTCGGGGCAATGTGAACTTTGTTCGAGGTGCCGGAGTTTTTTCAATGAGTCAGTCAACCC
ATGGAAGGAGCAATAACAAAGAAAATGAAGGAAAAGAAGCTCAACGAAATGGTTTTGTTACAACAAGGAAGAGTAGAATTGCGAAACCAAATGCTGAAAA
TTCTTTGGACATGCATAGGCAACAACAGATTTTGTTGGAATGTCCAAAAGGTAGAGGGATGACTTCAAGAGATGGTGAAAAGGATGCCGCTGTAAAAAGA
AAGGTGCTATCAGAAGTATCTAATCTTGAACACCCTGATGTGATTGGAGTCACTGGAAAATGGAAGTGTCCTCAGAAGAGTAAGCCAAATTTGGGACCTC
CTATGAAGCAGCTTCGACTTGAACGATGGGTTCATAGGCTATAA
AA sequence
>Potri.003G080700.1 pacid=42785977 polypeptide=Potri.003G080700.1.p locus=Potri.003G080700 ID=Potri.003G080700.1.v4.1 annot-version=v4.1
MENTSDSDSQAVPDSSLPLPSEPPDIRNWFPSYQYESFVLDTYDVFGGPILKETDFECTRDGCLCIEEVNKGKETISCDATRIGNNSSDDNQHEDQSFNK
MPDSLCSLSLLSEPPDIRNWFPSYEYESPVLDTAEYFIESVIKESEGEKDGFAIEESKNRREENAGDLSNSGNNNEVRANEKPSSNGSIKCKSSFGDVCD
NKPLSKVPDSSQSSSFLSEPPDIRNWFPSYVYESPALGESVGFLHDKTEREGDDFANQDSKRDKETNSWKLGQNRSSDEIEHSNGFLKFNSSLGEHKQEK
LLNKVSPSQDSWDVEKEGSSILDNLHHEGELSMEDESVLSHAIVPTKDVEKPSLRLEVPPFKQPQMQNLVQEVGFMSVTSNVRSSDKSATRLNCRKDSAE
NLVKAQTEIDLVSPRGNVNFVRGAGVFSMSQSTHGRSNNKENEGKEAQRNGFVTTRKSRIAKPNAENSLDMHRQQQILLECPKGRGMTSRDGEKDAAVKR
KVLSEVSNLEHPDVIGVTGKWKCPQKSKPNLGPPMKQLRLERWVHRL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G16807 unknown protein Potri.003G080700
[exp]
0 1
AT1G57820 ORTH2, VIM1 VARIANT IN METHYLATION 1, ORTH... Potri.003G162400
[exp]
3.46 0.7787
AT2G28120 Major facilitator superfamily ... Potri.001G194500
[exp]
5.91 0.7435
AT1G75090 DNA glycosylase superfamily pr... Potri.002G133800
[exp]
8.94 0.7472
AT3G44716 unknown protein Potri.009G148200
[exp]
12.72 0.7411
AT1G04150 C2 calcium/lipid-binding plant... Potri.002G254400
[exp]
13.78 0.7324
AT3G17030 Nucleic acid-binding proteins ... Potri.010G144400
[exp]
17.66 0.7355
AT4G13690 unknown protein Potri.003G177900
[exp]
20.42 0.7703
AT5G55540 LOP1, TRN1 LOPPED 1, tornado 1 (.1) Potri.001G361200
[exp]
20.71 0.7214
AT2G01820 CYCJ18 Leucine-rich repeat protein ki... Potri.010G103000
[exp]
21.79 0.7141
AT4G29910 EMB2798, ORC5, ... EMBRYO DEFECTIVE 2798, origin ... Potri.001G135975
[exp]
22.13 0.7407

Potri.003G080700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.