Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16800 266 / 8e-89 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G43280 91 / 8e-22 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT4G16210 85 / 3e-19 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) AT3G06860 73 / 3e-14 ATMFP2, ATMPF2, MFP2 multifunctional protein 2 (.1) AT1G60550 71 / 8e-14 ECHID, DHNS enoyl-CoA hydratase/isomerase D (.1) AT3G24360 71 / 1e-13 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2) AT4G13360 67 / 2e-12 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G29010 64 / 4e-11 AIM1 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) AT5G65940 61 / 3e-10 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) AT2G30650 60 / 5e-10 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G153300 [exp] 387 / 3e-136 AT4G16800 346 / 8e-120 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.001G061000 [exp] 98 / 7e-24 AT5G43280 379 / 1e-133 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Potri.008G220400 [exp] 98 / 1e-22 AT3G06860 1161 / 0.0 multifunctional protein 2 (.1) Potri.010G011900 [exp] 96 / 6e-22 AT3G06860 1154 / 0.0 multifunctional protein 2 (.1) Potri.010G146400 [exp] 76 / 4e-16 AT4G16210 418 / 2e-149 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.006G156350 [exp] 76 / 2e-15 AT4G13360 608 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.006G155700 [exp] 75 / 3e-15 AT4G13360 611 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.010G170200 [exp] 71 / 1e-13 AT5G65940 388 / 6e-133 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.001G329900 [exp] 68 / 6e-13 AT1G60550 550 / 0.0 enoyl-CoA hydratase/isomerase D (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010994 [exp] 290 / 8e-98 AT4G16800 351 / 2e-121 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10000420 [exp] 139 / 5e-40 AT4G16800 156 / 1e-46 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10006501 [exp] 94 / 9e-22 AT3G06860 504 / 4e-175 multifunctional protein 2 (.1) Lus10011336 [exp] 92 / 2e-21 AT5G43280 404 / 8e-144 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Lus10037495 [exp] 94 / 3e-21 AT3G06860 1170 / 0.0 multifunctional protein 2 (.1) Lus10002583 [exp] 89 / 2e-20 AT5G43280 399 / 1e-141 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Lus10016920 [exp] 72 / 2e-14 AT4G16210 395 / 1e-140 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10029142 [exp] 72 / 4e-14 AT1G60550 512 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Lus10013023 [exp] 72 / 5e-14 AT1G60550 514 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Lus10019396 [exp] 72 / 7e-14 AT4G13360 607 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [poplar] [flax] ClpP_crotonase PF00378 [poplar] [flax] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Potri.003G080800.1 pacid=42784745 polypeptide=Potri.003G080800.1.p locus=Potri.003G080800 ID=Potri.003G080800.1.v4.1 annot-version=v4.1 ATGATTGATAATAGCTTACCACGGCCATCCCCAGCTAAAATCAAAGAAAGAAACCCGAACCTGTCTCTCTGTTCCCGTCTAAACTCCCACCGAAATCTGT CTAAATCTCTCAAGAATCAAAGAAACAGACAAATGGGTACTTTCACTGCTCTAACAAGATCATTGGGTCATCGCTGCGTGAAAAAATCGAAATCGAATAA CTTACCGAATCTTTACATTTACAGCAACGGTCATCAGTACCAAACCCATAGAACCCTCATCTTGGAATCCCTATCCTATGAATCAGTCAGGCTTCGAAGG TTGTCAGATTCGGATTCTGGGATTGTTGAGGTTAATTTGGATAGGCCTGCAGCGAAAAATTCAATTGGGAAGGAAATGTTAAGAGGGTTACGCAATGCTT TTGAAACAATCGAAAGTGATGAATCTGCTCAGGTTGTTTTGATTTGCAGTTCGGTTCCAAAGGTTTTTTGTGCTGGTGCTGATTTAAAGGAGCGCAAGAC AATGACTCCATCTGAAGTTCAAAATTTTGTGAACTCATTGCGATCTACGTTCTCATTCATAGAGGCCCTCCGTGTTCCTACCATCGCTGTTATTGAAGGA GTAGCATTAGGTGGTGGACTTGAAATGGCTTTGTCATGTGATCTTCGGATATGTGGAGAAGATGCAGTATTGGGCTTGCCAGAAACAGGACTTGCCATAA TTCCTGGTGCAGGTGGGACTCAAAGACTTCCTAGGTTGGTAGGAAAATCACTGGCAAAGGAACTGATATTTACTGGCCGCAAGATTGGTGGTAGAGAGTA TGCCAATGGGGCTTGCCAATTACTCTGTCCCTGCCAGTGA
AA sequence Show only first row Show all	>Potri.003G080800.1 pacid=42784745 polypeptide=Potri.003G080800.1.p locus=Potri.003G080800 ID=Potri.003G080800.1.v4.1 annot-version=v4.1 MIDNSLPRPSPAKIKERNPNLSLCSRLNSHRNLSKSLKNQRNRQMGTFTALTRSLGHRCVKKSKSNNLPNLYIYSNGHQYQTHRTLILESLSYESVRLRR LSDSDSGIVEVNLDRPAAKNSIGKEMLRGLRNAFETIESDESAQVVLICSSVPKVFCAGADLKERKTMTPSEVQNFVNSLRSTFSFIEALRVPTIAVIEG VALGGGLEMALSCDLRICGEDAVLGLPETGLAIIPGAGGTQRLPRLVGKSLAKELIFTGRKIGGREYANGACQLLCPCQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16800			ATP-dependent caseinolytic (Cl...		Potri.003G080800 [exp]	0	1
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Potri.011G166100 [exp]	12.60	0.8698
AT5G14430			S-adenosyl-L-methionine-depend...		Potri.001G342300 [exp]	17.40	0.8408
AT2G34560			P-loop containing nucleoside t...		Potri.004G065100 [exp]	19.23	0.8647
AT2G04660		APC2	anaphase-promoting complex/cyc...		Potri.008G089100 [exp]	26.45	0.8326	APC2.2
AT4G00290			Mechanosensitive ion channel p...		Potri.014G088200 [exp]	39.24	0.8230
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Potri.004G119400 [exp]	40.42	0.8189
AT3G05890		RCI2B	RARE-COLD-INDUCIBLE 2B, Low te...		Potri.005G002250 [exp]	42.42	0.8222
AT4G20280		TAF11	TBP-associated factor 11 (.1)		Potri.001G073500 [exp]	51.38	0.7758
AT1G03030			P-loop containing nucleoside t...		Potri.005G218700 [exp]	56.55	0.8231
AT5G11600			unknown protein		Potri.018G043800 [exp]	62.16	0.7930

Compare expression of checked genes

Potri.003G080800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.