Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CARA.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27740 647 / 0 VEN6, CARA VENOSA 6, carbamoyl phosphate synthetase A (.1.2) AT5G57890 72 / 8e-14 Glutamine amidotransferase type 1 family protein (.1) AT1G25220 71 / 2e-13 WEI7, TRP4, ASB1 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) AT1G25155 68 / 7e-13 Glutamine amidotransferase type 1 family protein (.1) AT1G24909 68 / 7e-13 Glutamine amidotransferase type 1 family protein (.1) AT1G25083 68 / 7e-13 Glutamine amidotransferase type 1 family protein (.1) AT1G24807 66 / 4e-12 Glutamine amidotransferase type 1 family protein (.1) AT1G63660 45 / 7e-05 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G153400 [exp] 803 / 0 AT3G27740 676 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2) Potri.008G138800 [exp] 72 / 6e-14 AT1G25220 404 / 2e-143 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Potri.010G102200 [exp] 70 / 2e-13 AT1G25220 401 / 1e-142 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Potri.003G128200 [exp] 42 / 0.0008 AT1G63660 910 / 0.0 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039874 [exp] 729 / 0 AT3G27740 678 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2) Lus10018639 [exp] 719 / 0 AT3G27740 676 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2) Lus10013241 [exp] 71 / 2e-13 AT1G25220 368 / 2e-129 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Lus10030761 [exp] 71 / 2e-13 AT1G25220 363 / 9e-127 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [poplar] [flax] Glutaminase_I PF00117 [poplar] [flax] GATase Glutamine amidotransferase class-I CL0364 [poplar] [flax] Leu-IlvD PF00988 [poplar] [flax] CPSase_sm_chain Carbamoyl-phosphate synthase small chain, CPSase domain
Representative CDS sequence Show only first row Show all	>Potri.003G080900.2 pacid=42785510 polypeptide=Potri.003G080900.2.p locus=Potri.003G080900 ID=Potri.003G080900.2.v4.1 annot-version=v4.1 ATGGAGCTTGCGATAAAAACCCCTATTGCCCCAACAACACAAAACTTCTTAAAATCAAAACCAAAGGTGAAATCTTTGAGGGTTTTCAGTCTCAAATGCG TATCTTCTCTTTCTTCCTCAGATGGTGCTGCCACTGGTGTGGTGGAAAGACCTTGGAAAACCTCAGATGCTAGATTAGTGCTTGAAGACGGTTCAGTTTG GAGGGCTAAGTCATTTGGTGCTAGAGGAACTCAAGTCGGTGAAGTTGTTTTCAATACTTCTTTGACAGGGTATCAAGAAATCCTCACAGATCCTAGTTAT GCTGGGCAGTTTGTTCTTATGACAAACCCACATATTGGGAACACAGGGGTAAATTTTGATGATGAGGAATCAAGGCAGTGTTTCCTTGCTGGTCTTGTTA TCAGGAGCTTAAGTATCAGTACGTCGAATTGGAGGTGCACAAAAGAACTTGGTGATTACTTGCTTGAAAGGAACATCATGGGAATATATGATGTTGACAC ACGTGCAATCACCCGCAGATTGAGGCAAGACGGAAGCCTTGTCGGTGTCCTAACCACAGAAGAATTGAAGACAGATGAGGAACTTTTAAAAATGTCTCGC TCATGGGACATAGAAGGTATTGATTTGATAAGCGGTGTCTCTTGCACTGCCCCTTATGAATGGGTTGACAAAACAGATCTAGAGTGGGACTTTAACTGCG AGGGAAGAGGAGAGATTTACCATGTCATTGCGTATGATTTTGGGATCAAGCATAATATACTCAGACGCTTAGCATCTTATGGCTGTAAAATCACTGTGGT GCCTTCAAATTGGCCAGCATCAGAAGCTCTAAAGATGAAACCAGACGGAGTTCTTTTCAGCAATGGACCTGGAGACCCTTCTGCAGTTCCTTATGCTGTT GAAACAGTCAAGGAATTGCTGGGAAAGGTTCCTGTTTTTGGAATTTGTATGGGCCATCAGTTGCTTGGCCAGGCATTGGGTGGTAAAACCTTTAAGATGA AGTTTGGCCACCATGGAGGAAATCATCCCGTCCGCAACCTTCTTGCAAACCGTGTAGAAATTAGTGCCCAGAATCACAACTATGCAGTTGACCCTGCATC ACTTCCCGAAGGTGTGGAAGTGACGCACATTAATCTTAATGATGGAAGCTGTGCTGGTCTTGCTTTTCCTGCGCTAAATGTCATGTCTCTACAATACCAT CCTGAGGCATCACCAGGACCTCATGATTCAGATTCTGTTTTTGGAGAATTCATGGAGTTAATGAAGAAAGTAAAACAAAAGGCATAA
AA sequence Show only first row Show all	>Potri.003G080900.2 pacid=42785510 polypeptide=Potri.003G080900.2.p locus=Potri.003G080900 ID=Potri.003G080900.2.v4.1 annot-version=v4.1 MELAIKTPIAPTTQNFLKSKPKVKSLRVFSLKCVSSLSSSDGAATGVVERPWKTSDARLVLEDGSVWRAKSFGARGTQVGEVVFNTSLTGYQEILTDPSY AGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSISTSNWRCTKELGDYLLERNIMGIYDVDTRAITRRLRQDGSLVGVLTTEELKTDEELLKMSR SWDIEGIDLISGVSCTAPYEWVDKTDLEWDFNCEGRGEIYHVIAYDFGIKHNILRRLASYGCKITVVPSNWPASEALKMKPDGVLFSNGPGDPSAVPYAV ETVKELLGKVPVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNLLANRVEISAQNHNYAVDPASLPEGVEVTHINLNDGSCAGLAFPALNVMSLQYH PEASPGPHDSDSVFGEFMELMKKVKQKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Potri.003G080900 [exp]	0	1	Pt-CARA.2
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Potri.015G095700 [exp]	1.73	0.9228	Pt-RPL21.5
AT4G20440		SMB	small nuclear ribonucleoprotei...		Potri.011G155700 [exp]	1.73	0.9149
AT3G49320			Metal-dependent protein hydrol...		Potri.015G007900 [exp]	3.74	0.9151
AT1G75330		OTC	ornithine carbamoyltransferase...		Potri.005G229400 [exp]	4.69	0.8591
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Potri.001G409800 [exp]	5.65	0.9018
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Potri.015G065800 [exp]	7.48	0.8730
AT3G20330		PYRB	PYRIMIDINE B (.1)		Potri.001G357200 [exp]	9.79	0.8836
AT5G64670			Ribosomal protein L18e/L15 sup...		Potri.001G324300 [exp]	11.61	0.8639
AT2G42710			Ribosomal protein L1p/L10e fam...		Potri.014G143000 [exp]	12.96	0.8546
AT2G44640			unknown protein		Potri.014G044200 [exp]	14.31	0.8883

Compare expression of checked genes

Potri.003G080900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.