Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17510 380 / 2e-135 UCH3 ubiquitin C-terminal hydrolase 3 (.1) AT5G16310 77 / 1e-16 UCH1 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) AT1G65650 73 / 6e-15 UCH2 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G130400 [exp] 77 / 2e-16 AT1G65650 483 / 7e-173 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Potri.017G075200 [exp] 76 / 6e-16 AT1G65650 489 / 1e-175 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020144 [exp] 386 / 7e-138 AT4G17510 349 / 2e-123 ubiquitin C-terminal hydrolase 3 (.1) Lus10026940 [exp] 354 / 4e-119 AT4G17510 327 / 4e-108 ubiquitin C-terminal hydrolase 3 (.1) Lus10031062 [exp] 79 / 4e-17 AT1G65650 502 / 1e-180 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Lus10035444 [exp] 74 / 2e-15 AT1G65650 494 / 1e-177 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Lus10042047 [exp] 71 / 5e-14 AT1G65650 484 / 8e-173 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF01088 [poplar] [flax] Peptidase_C12 Ubiquitin carboxyl-terminal hydrolase, family 1
Representative CDS sequence Show only first row Show all	>Potri.003G081000.5 pacid=42785988 polypeptide=Potri.003G081000.5.p locus=Potri.003G081000 ID=Potri.003G081000.5.v4.1 annot-version=v4.1 ATGACGACTATCGATGAAAGTGCTGGTGCTAAGAGGTGGCTTCCTCTTGAAGCTAACCCTGATGTTATGAATCAGTTTCTTTGGGGGCTAGGACTTCCAC TGGATGAAGCAGAGTGCTGTGATGTTTATGGCTTGGATGAGGAACTCTTGGAAATGGTTCCAAAGCCTGTACTTGCTGTTTTGTTTCTATATCCTATAAC AGCACAGAGCGAAGCTGAGAGAATTCAGCAGGAAAGCATTAAAACGGATCCAAGCAGTAAAGTTTATTTCATGAAACAAACCGTGGGTAATGCTTGCGGA ACAATAGGACTCCTTCATGCTGTTGGGAATATCACTTCAGAGATCAAGCTCGCTGACGGGTCATTCTTCGATAGATTTTTCAAATCAACTGCAAACATGG ATCCATTGGAGCGAGCAAGATTCCTTGAGAATGACAGAGAAATGGAAGATGCTCATTCTGTAGCGGCCACAGGAGGTGATACAGAGGCTACGGAAAATGT GGACACTCATTTTATCTGCTTCACCTGTGTAGATGGAAAACTTTTTGAGCTTGATGGAAGAAAATCTGGGCCAATATCTCATGGTGCATCCTCACCAGGC AGCTTGCTACAGGATGCTGCTAAAGTCATACAAGGCATGATCGAGAAAAATCCTGGCTCGCTCAACTTTAATGTAATTGCAATTTCAAAGAGAGCTTAG
AA sequence Show only first row Show all	>Potri.003G081000.5 pacid=42785988 polypeptide=Potri.003G081000.5.p locus=Potri.003G081000 ID=Potri.003G081000.5.v4.1 annot-version=v4.1 MTTIDESAGAKRWLPLEANPDVMNQFLWGLGLPLDEAECCDVYGLDEELLEMVPKPVLAVLFLYPITAQSEAERIQQESIKTDPSSKVYFMKQTVGNACG TIGLLHAVGNITSEIKLADGSFFDRFFKSTANMDPLERARFLENDREMEDAHSVAATGGDTEATENVDTHFICFTCVDGKLFELDGRKSGPISHGASSPG SLLQDAAKVIQGMIEKNPGSLNFNVIAISKRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17510		UCH3	ubiquitin C-terminal hydrolase...		Potri.003G081000 [exp]	0	1
AT2G23940			Protein of unknown function (D...		Potri.018G101100 [exp]	5.83	0.8819
AT1G64520		RPN12A	regulatory particle non-ATPase...		Potri.001G088200 [exp]	6.32	0.8968
AT5G51960			unknown protein		Potri.008G044200 [exp]	12.12	0.8795
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Potri.008G155500 [exp]	14.83	0.8732	Pt-PBD2.3
AT1G64520		RPN12A	regulatory particle non-ATPase...		Potri.003G142700 [exp]	17.29	0.8538
AT4G34270			TIP41-like family protein (.1)		Potri.001G298500 [exp]	17.34	0.8448
AT5G11900			Translation initiation factor ...		Potri.018G052900 [exp]	22.84	0.8547
AT1G67250			Proteasome maturation factor U...		Potri.006G249600 [exp]	25.00	0.8532
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Potri.013G051500 [exp]	25.57	0.8730
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Potri.012G095300 [exp]	27.27	0.8744

Compare expression of checked genes

Potri.003G081000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.