Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16845 391 / 2e-133 VRN2 REDUCED VERNALIZATION RESPONSE 2, VEFS-Box of polycomb protein (.1.2) AT5G51230 358 / 4e-118 C2H2ZnF AtEMF2, CYR1, VEF2, EMF2 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3) AT2G35670 154 / 1e-40 FIE2, FIS2 FERTILIZATION INDEPENDENT SEED 2, FERTILIZATION-INDEPENDENT ENDOSPERM 2, VEFS-Box of polycomb protein (.1) AT4G16810 125 / 8e-33 VEFS-Box of polycomb protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G150450 [exp] 380 / 2e-126 AT5G51230 707 / 0.0 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3) Potri.001G080200 [exp] 378 / 8e-126 AT5G51230 703 / 0.0 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032500 [exp] 347 / 1e-113 AT5G51230 733 / 0.0 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3) Lus10042997 [exp] 345 / 1e-112 AT5G51230 717 / 0.0 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09733 [poplar] [flax] VEFS-Box VEFS-Box of polycomb protein
Representative CDS sequence Show only first row Show all	>Potri.003G081400.2 pacid=42785850 polypeptide=Potri.003G081400.2.p locus=Potri.003G081400 ID=Potri.003G081400.2.v4.1 annot-version=v4.1 ATGTGCCATCAGAATTGTGGCGTGGAGCATTTGTCCGTAGAAGAGGCAATAGCAGCTGATGAGAGTCTACTTATTTACTGCAAGCCTGTTGAGCTTTACA ATATCCTTCGCCGCCGTGCTCAAGACAACCCTTCATTTCTTCGGAGATGTTTGCGTTACAAAATAAAAGAAAGGCGTAAAAAGAGGTTAAGAGATGGAAT TGTAATTTTCAACTACAAGGACTACAAGAACATGCTACGAAAGACTGAAGCAACCGAGGACTTCTCCTGTCCATTTTGCTTGATGCAATGTTTAAGCTTT AAGGGCCTGCGGTATCACTTGTGCTCTTCTCATGACCTATTCAACTTCGATTTTTGGGTGACTGAAGAGTATCAAGCAGTGACTGTCTCTGTGAATATTG ATAGATTTATATCAGAGACTGTTGCAGATGGAATAGAGCAGCGACAGCAGACATTTTTTTTCTGCTCAAAGCCACGAACACGCAAGTCAATAAACCTTGA CCAAAATGTGAAGAAAGTTTCCATAAAGTTCTTGGAGTTGAATTCATCCGAAGGCACGAACAATGGATTTTTGGGGAAGGAAGAGGGTGAGAATGCTTCC AAGTCATCTTCTAGTGAGAAAGATTTGCTCAACATGAGAGATGGAACAGAAAACTATGGTTCTGAGTGTCCTACCGCTACAGAGTTAATGGAGCGTGTTG CATCCAGTTTTAGTATCCCTGGTGTTTCAATTGCCCAGGCTCAATCTTCCGTGGATCCTGAATGTGTTAAATCACAATCTGGAAGTGAACCTTCACTTCC TGCTGCACTCCATGTTGCAAAAGCAAGGAAGCTAACTGTGGAACGGTCAGACCCTAAATACCGTGCGCTTCTGCAGAAACGACAATTCTATCACTCTCAT AGAGTTCAGCCTATGGCATTAGAACAAGTAATGTCAGATAGAGATAGTGAAGATGAAGTTGATGATGACATTGCAGATTTTGAAGATAGAAGGATGCTTG ATGACTTCGTCGATGTTAGCAAAGATGAGAAGCAAGTCATGCATCTCTGGAATTCATTTGTGAGAAAGCAAAGGGTCCTAGCAGATGGTCACGTTCCGTG GGCATGTGAGGCATTTTCAAAACTTCATGGACAGGAGTTGGTCATCTCTCCTGCTCTCTTTTGGTGTTGGAGGTTATTTATGATCAAACTCTGGAACCAT GGTCTTCTCGACGCATCCACGATGAACAACTGCAACATGATCCTCGAAAGATGCCGAGATGAAGGGTCGGGTGCTGCAAAAAGTGAAAGGCTAGAAGATT GA
AA sequence Show only first row Show all	>Potri.003G081400.2 pacid=42785850 polypeptide=Potri.003G081400.2.p locus=Potri.003G081400 ID=Potri.003G081400.2.v4.1 annot-version=v4.1 MCHQNCGVEHLSVEEAIAADESLLIYCKPVELYNILRRRAQDNPSFLRRCLRYKIKERRKKRLRDGIVIFNYKDYKNMLRKTEATEDFSCPFCLMQCLSF KGLRYHLCSSHDLFNFDFWVTEEYQAVTVSVNIDRFISETVADGIEQRQQTFFFCSKPRTRKSINLDQNVKKVSIKFLELNSSEGTNNGFLGKEEGENAS KSSSSEKDLLNMRDGTENYGSECPTATELMERVASSFSIPGVSIAQAQSSVDPECVKSQSGSEPSLPAALHVAKARKLTVERSDPKYRALLQKRQFYHSH RVQPMALEQVMSDRDSEDEVDDDIADFEDRRMLDDFVDVSKDEKQVMHLWNSFVRKQRVLADGHVPWACEAFSKLHGQELVISPALFWCWRLFMIKLWNH GLLDASTMNNCNMILERCRDEGSGAAKSERLED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16845		VRN2	REDUCED VERNALIZATION RESPONSE...		Potri.003G081400 [exp]	0	1
AT2G37150			RING/U-box superfamily protein...		Potri.010G220700 [exp]	4.00	0.6728
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Potri.012G119200 [exp]	10.39	0.6422
AT5G13590			unknown protein		Potri.010G213800 [exp]	10.81	0.6853
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.005G230500 [exp]	19.74	0.6147
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Potri.015G137900 [exp]	20.12	0.6030
AT1G05960			ARM repeat superfamily protein...		Potri.007G128000 [exp]	21.16	0.6271
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261300 [exp]	30.98	0.6389
AT1G77810			Galactosyltransferase family p...		Potri.005G171400 [exp]	36.87	0.6016
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Potri.006G064200 [exp]	38.57	0.6233	Pt-CRCK3.1
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Potri.006G219500 [exp]	44.36	0.5739	Pt-GPA1.2

Compare expression of checked genes

Potri.003G081400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.