Plant FIBer expression Database

Potri.003G081600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G17520 179 / 4e-53 Hyaluronan / mRNA binding family (.1)
AT4G16830 163 / 5e-47 Hyaluronan / mRNA binding family (.1.2.3)
AT5G47210 150 / 5e-42 Hyaluronan / mRNA binding family (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G153000
[exp]
337 / 3e-114 AT4G17520 128 / 1e-33 Hyaluronan / mRNA binding family (.1)
Potri.002G138300
[exp]
209 / 1e-64 AT4G17520 133 / 1e-35 Hyaluronan / mRNA binding family (.1)
Potri.014G049300
[exp]
205 / 1e-62 AT4G16830 159 / 2e-46 Hyaluronan / mRNA binding family (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040157
[exp]
152 / 1e-42 AT4G17520 181 / 1e-53 Hyaluronan / mRNA binding family (.1)
Lus10004362
[exp]
149 / 2e-41 AT4G17520 183 / 1e-54 Hyaluronan / mRNA binding family (.1)
Lus10000599
[exp]
110 / 9e-29 AT4G17520 170 / 7e-52 Hyaluronan / mRNA binding family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04774 HABP4_PAI-RBP1 Hyaluronan / mRNA binding family
PF09598 Stm1_N Stm1
Representative CDS sequence
>Potri.003G081600.1 pacid=42784568 polypeptide=Potri.003G081600.1.p locus=Potri.003G081600 ID=Potri.003G081600.1.v4.1 annot-version=v4.1
ATGGCAACCGCGAACCCTTTTGATATCCTTGGTGATGACGACAACAATGAGGACCTTTCTCAGCTCGTTGCCGCCGCTCAGCTTAAGGCAGCTGAGAAGC
CCAAGAAGGTTGAAAAGCCAGCTGCTCCTACTTCTCAGCCTGCCAAGCTCCCCTCCAGGCCTGCTCCCCCTGCTCAAGCTGTGAGGGAAGCAAAGAATGA
AGGTGGCCGTGGAGGAGGCCGTGGAGAAGGACGTGGGTATGGGCGTGGGCGTGGTCGCGGTGGCAGTGGTGGATTTAACAGAGATTCAAATAACAATGAA
ACTTCCTTCACTGGCAATGGATTCTCTGGACGATCCAGACCATCTGAAGATGGGGAGGCTGCCGAGAGACGCGGATATGGTGCACCTCGTGGTGGTTTCC
GTGGCAGTCGCCGTGGCGGTTATAGCAACGGGGAAGATGGAGAAGGTGAACGCCCTCGAAGGATGTATGAACGGCACAGCGGCACTGGTCGCGGGAATGA
GATTAAGCGTGAAGGGTCTGGCCGTGGTAACTGGGGAACTCCTACTGATGAAATTGCTCTGGAGACTGAAGATCCTGTTGTTGACAATGAGAAGAATGTT
ATAACTGAGAAGCAGCAAGGAGAGGAGGATGCTGCAGATGCCAATAAGGACACTGCTGAGAAGCCAGAAGAGAAGGAGCCAGAAGAGAAGGAGATGACAT
TAGAAGAGTATGAGAAGGTTCTTGAAGAAAAAAGGAAGGCTCTGCTTGATCTGAAGACCGAGGAGAGGAAAGTTGGCTTGGACAAAGACTTGCAGTGCAT
GCAACAGCTCTCGAGTAAGAAGAGCAACGATGAAATCTTTATCAAACTGGGTTCTGAGAAGGACAAACGAAAAGATGCTGCAGACAAAGAAGACAGAGCC
AAGAAGGCTGTCAGTATAAATGAGTTCCTGAAGCCTGCTGAAGGGGAGAGGTCCTACAATTCTGGTCGTGGTGGTCGAGGCCGTGGCCGTGGAAGGGGTG
GATATGGAAGCGGAAGCGGATATGGAAGCAATGCTCGTGATGTGGCAGCCCCCTCTATTGAAGACCCTGGGCAGTTCCCCTCCTTGGGTGGCAAGTGA
AA sequence
>Potri.003G081600.1 pacid=42784568 polypeptide=Potri.003G081600.1.p locus=Potri.003G081600 ID=Potri.003G081600.1.v4.1 annot-version=v4.1
MATANPFDILGDDDNNEDLSQLVAAAQLKAAEKPKKVEKPAAPTSQPAKLPSRPAPPAQAVREAKNEGGRGGGRGEGRGYGRGRGRGGSGGFNRDSNNNE
TSFTGNGFSGRSRPSEDGEAAERRGYGAPRGGFRGSRRGGYSNGEDGEGERPRRMYERHSGTGRGNEIKREGSGRGNWGTPTDEIALETEDPVVDNEKNV
ITEKQQGEEDAADANKDTAEKPEEKEPEEKEMTLEEYEKVLEEKRKALLDLKTEERKVGLDKDLQCMQQLSSKKSNDEIFIKLGSEKDKRKDAADKEDRA
KKAVSINEFLKPAEGERSYNSGRGGRGRGRGRGGYGSGSGYGSNARDVAAPSIEDPGQFPSLGGK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G17520 Hyaluronan / mRNA binding fami... Potri.003G081600
[exp]
0 1
AT2G24590 RSZ22a, At-RSZ2... RS-containing zinc finger prot... Potri.006G272400
[exp]
2.00 0.8478 SRZ.3
AT3G44750 HDT1, HDA3, ATH... HISTONE DEACETYLASE 2A, histon... Potri.009G149400
[exp]
2.23 0.8741 HD2.2,HDT901
AT5G65860 ankyrin repeat family protein ... Potri.014G019000
[exp]
6.00 0.8228
AT3G09630 Ribosomal protein L4/L1 family... Potri.006G132450
[exp]
6.32 0.8420
AT4G20980 Eukaryotic translation initiat... Potri.004G044500
[exp]
7.74 0.8205
AT3G04770 RPSAB 40s ribosomal protein SA B (.1... Potri.012G117600
[exp]
8.30 0.8539
AT3G56150 ATTIF3C1, ATEIF... eukaryotic translation initiat... Potri.002G016900
[exp]
8.71 0.8028 Pt-TIF3.10
AT3G49990 unknown protein Potri.005G234800
[exp]
10.48 0.8272
AT5G39850 Ribosomal protein S4 (.1) Potri.018G062300
[exp]
10.81 0.8221
AT3G13160 Tetratricopeptide repeat (TPR)... Potri.004G029900
[exp]
10.95 0.8295

Potri.003G081600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.