Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16835 852 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 566 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 505 / 9e-171 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G56690 500 / 1e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46460 476 / 1e-159 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 459 / 8e-152 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G25360 455 / 3e-150 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20230 452 / 2e-149 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 448 / 2e-147 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 441 / 4e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048800 [exp] 572 / 0 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G005400 [exp] 530 / 2e-180 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G006400 [exp] 511 / 4e-173 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G354400 [exp] 478 / 1e-160 AT5G46460 863 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 473 / 2e-158 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 471 / 6e-157 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.018G040100 [exp] 470 / 2e-156 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 474 / 1e-155 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G011000 [exp] 468 / 4e-155 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010998 [exp] 877 / 0 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000597 [exp] 583 / 0 AT4G16835 545 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013540 [exp] 556 / 0 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013149 [exp] 496 / 6e-167 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015256 [exp] 483 / 3e-162 AT5G46460 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 458 / 2e-151 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10036921 [exp] 448 / 1e-148 AT4G37170 806 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001617 [exp] 445 / 3e-148 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 442 / 3e-147 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 449 / 4e-147 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.003G081700.2 pacid=42787157 polypeptide=Potri.003G081700.2.p locus=Potri.003G081700 ID=Potri.003G081700.2.v4.1 annot-version=v4.1 ATGAAAACCATAACCCAAAAATTCTCTTCTTTTTGCTTCCCAAACCTCGGTATTGAAAATGTATTATTTCCCAACAAAACAGAAAACCCACTTTCCCTCC ATTTCCTCAAGACTTTCTCACCCGCCAAACAGCGTGCTTCTTCTCTCTCCACCTGCACTATCCAAAACCCAATTGCCGATCCTAACAGAGAAGCAAATTC CCCAACCAAAACCCAATTGTATCCTACCATTTTTGGCAAATCTACTAAACCACTTCACCACCATGCCAAATCTAGTGACGTCATTTTATCAAACAAGATG ATCACTAGCCATATCAGATGCGGCGACTTAGATTCTGCTCTTAACGTGTTCGACAACATGACTCTTAAGACAACAGTTACCTGGAATTCGGTTTTAGCGG GTATGTCAAAGAAGCGCGGTAAATTGAAGGAAGCCCAAGAACTGTTTGTTAAAATACCTGAACCAGATGCTGTCTCATATAACACCATGTTATCTTGTTA TGTACGTAATTCTAACATGGAAAGAGCTCAGGCTTTCTTTGAAGATATGCCCATTAAAGACACACCTTCTTGGAATACAATGATAACCGGTTTTGCGCAG AATCAGCAAATGGACAAAGCACGCGACTTGTTCTTGATAATGCCAACGAAAAATGTAGTCACTTGGAATGCTATGATTTCAGGTTATGTAGAGTGTGGGG ACCTGGACTCCGCGTTAAAGTTGTTTGAAAAAGCGCCATTTAAGAGTGTGGTGGCCTGGACCGCTATGATCACTGGGTACATGAAGCTTGGGAGGATTGG ATTGGCAGAAAGATTGTTTGAAAAGATGCCCGAGAAAAATTTGGTGACTTGGAATGCTATGATTGCAGGTTATATTGAGAATCACAGAGCTGAGGATGGT GTAAAACTTTTCCGAACAATGGTGGGATTTGGTATTCAGCCAAATTCGTCAACTTTGAGCAGTGCTTTGTTAGGGTGTAGTGAGTTGTCTGCTTTACAGT TGGGCAGGCAAGTGCATCAGCTAGTTTGTAAGTCTCCACTGTGTGATGATACAACCGCAGGAACTTCGTTGATTAGCATGTACTGTAAGTGCGGAGTTTT GGAGGATGGCTGGAAATTGTTTGTTCAGGTTCCAAGGAGGGATGTTGTCACTTGGAATGCAATGATTTCTGGTTATGCTCAGCATGGAGAAGGTAAAAAA GCTCTGGGTTTGTTTGATGAGATGATAGAGAAAGGAATGAAGCCAGACTGGATCACTTTTGTTGCGGTATTAATGGCATGTAACCATGCTGGATTTACAG ACCTTGGGGTTAAATATTTCCATTCAATGGCGAAGGATTATGGACTTGTAGCTAAGCCTGATCATTATACATGCATGGTTGATCTTCTTGGTCGGGCAGG TAAGTTAGTAGAGGCTGTAGATTTGATAGAGAAAATGCCTTTCAAACCTCATGCTGCTGTATTTGGAACCCTTTTGGGTGCTTGTAGAATACACAAGAAC ACTGAGATGGCGGAATTCGCTTCCCAGAAGTTGCTTAATCTTGATCCAGCTAGTGCAACTGGTTATGTTCAACTTGCTAATGTTTATGCAGCTACAAAAA GATGGGACCATGTTGCTAGAGTTAGAAAATCAATGAAAAGCTGCAAGGTGGTGAAGACACCAGGGTACAGTTGGATTGAGGTTAAGAGTATGGCCCATCA GTTCAGATCAGGTGATAAGTTTCACCCAGAATTAGCTTCTATACATGGGAAACTGAAGGAGTTGGAAAAGAAAATGAAGTTAGCAGGGTATGTGCCAGAT CTTGAATTTGCATTGCATGATGTAGGGGAAGAGCAAAAAGAGCAGCTTTTACTGTGGCACAGTGAAAAGTTGGCAATTGCTTATGGCCTTATAAAATTGC CACCTGGCACTCCAATCAGGGTGTTTAAAAACCTGAGAGTATGCGGAGATTGTCATAGAGCTATCAAGTACATATCACAAATAGAAAGAAGGGAAATCAT TGTTAGAGATACTACGAGGTTTCATCATTTTAAGGATGGGCATTGCTCTTGTGCTGATTACTGGTAG
AA sequence Show only first row Show all	>Potri.003G081700.2 pacid=42787157 polypeptide=Potri.003G081700.2.p locus=Potri.003G081700 ID=Potri.003G081700.2.v4.1 annot-version=v4.1 MKTITQKFSSFCFPNLGIENVLFPNKTENPLSLHFLKTFSPAKQRASSLSTCTIQNPIADPNREANSPTKTQLYPTIFGKSTKPLHHHAKSSDVILSNKM ITSHIRCGDLDSALNVFDNMTLKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQ NQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDG VKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKK ALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKN TEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASIHGKLKELEKKMKLAGYVPD LEFALHDVGEEQKEQLLLWHSEKLAIAYGLIKLPPGTPIRVFKNLRVCGDCHRAIKYISQIERREIIVRDTTRFHHFKDGHCSCADYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16835			Tetratricopeptide repeat (TPR)...		Potri.003G081700 [exp]	0	1
AT3G18020			Pentatricopeptide repeat (PPR)...		Potri.015G039300 [exp]	1.00	0.9524
AT5G62370			Tetratricopeptide repeat (TPR)...		Potri.004G200900 [exp]	2.44	0.9358
AT1G77170			Tetratricopeptide repeat (TPR)...		Potri.006G164100 [exp]	2.82	0.9336
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Potri.008G058600 [exp]	3.16	0.9151
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.002G091101 [exp]	3.16	0.9391
AT5G46460			Pentatricopeptide repeat (PPR)...		Potri.001G354400 [exp]	3.46	0.9267
AT5G07900			Mitochondrial transcription te...		Potri.001G029400 [exp]	4.00	0.9023
AT3G62470			Pentatricopeptide repeat (PPR)...		Potri.014G121400 [exp]	5.65	0.9203
AT5G13230			Tetratricopeptide repeat (TPR)...		Potri.001G062566 [exp]	6.16	0.8988
AT2G40360			Transducin/WD40 repeat-like su...		Potri.003G009600 [exp]	6.32	0.8987

Compare expression of checked genes

Potri.003G081700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.