Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02890 191 / 1e-57 HXXXD-type acyl-transferase family protein (.1) AT3G23840 54 / 5e-08 HXXXD-type acyl-transferase family protein (.1) AT4G29250 53 / 2e-07 HXXXD-type acyl-transferase family protein (.1) AT4G13840 47 / 1e-05 HXXXD-type acyl-transferase family protein (.1) AT5G16410 46 / 3e-05 HXXXD-type acyl-transferase family protein (.1) AT4G24510 43 / 0.0003 VC2, VC-2, CER2 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) AT5G48930 42 / 0.0006 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G152500 [exp] 498 / 1e-177 AT5G02890 211 / 4e-65 HXXXD-type acyl-transferase family protein (.1) Potri.005G153600 [exp] 61 / 6e-10 AT4G24510 313 / 4e-103 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) Potri.018G032700 [exp] 58 / 5e-09 AT4G29250 437 / 5e-151 HXXXD-type acyl-transferase family protein (.1) Potri.018G104700 [exp] 54 / 1e-07 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.012G144500 [exp] 53 / 2e-07 AT5G23940 590 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Potri.001G319200 [exp] 52 / 4e-07 AT4G13840 356 / 6e-120 HXXXD-type acyl-transferase family protein (.1) Potri.005G028100 [exp] 50 / 1e-06 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G230900 [exp] 48 / 7e-06 AT1G27620 607 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.015G147300 [exp] 47 / 1e-05 AT5G23940 578 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011003 [exp] 231 / 5e-73 AT5G02890 213 / 5e-66 HXXXD-type acyl-transferase family protein (.1) Lus10000592 [exp] 229 / 4e-72 AT5G02890 217 / 1e-67 HXXXD-type acyl-transferase family protein (.1) Lus10004360 [exp] 190 / 8e-57 AT5G02890 220 / 1e-68 HXXXD-type acyl-transferase family protein (.1) Lus10040156 [exp] 187 / 1e-55 AT5G02890 213 / 6e-66 HXXXD-type acyl-transferase family protein (.1) Lus10028335 [exp] 56 / 2e-08 AT4G29250 365 / 1e-122 HXXXD-type acyl-transferase family protein (.1) Lus10041782 [exp] 50 / 1e-06 AT4G29250 348 / 8e-116 HXXXD-type acyl-transferase family protein (.1) Lus10016638 [exp] 49 / 4e-06 AT4G13840 315 / 2e-103 HXXXD-type acyl-transferase family protein (.1) Lus10021395 [exp] 45 / 5e-05 AT5G48930 219 / 1e-66 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10020332 [exp] 45 / 6e-05 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10026123 [exp] 44 / 0.0002 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.003G082100.2 pacid=42784791 polypeptide=Potri.003G082100.2.p locus=Potri.003G082100 ID=Potri.003G082100.2.v4.1 annot-version=v4.1 ATGGCAATGTCCCAGATTAGTAGTGAGTTTGTGCATAAAGTACAAATTGAAGGTGTGCAAACAGTGGCACCCTCCAAGGTGACTGATCCAAGAGAAACGT GCCTAGTGTCAGTGAAGGACCCTGTTAGTTCAGATATTTTCCGGGGGTGCCTGAGCATAGTCCTCTGCTACAACAAGGCCGTGGAGGAAGATTCTGGTTG GCTTGTTGCGGGATGGATTAAGGAGTCCCTGGGGAGAGCATTGCAGGACCAACCGATGCTCAGTGGACGACTACGGAGAGTTGAAGATGGCAATGGAGAA CTAGAGATGGTGTCAAACGATACCGGAGTTAGACTTGTTGAGGCAAAGATTACAATGACTTTGCAAGAGTTTCTTGGTTTGGAAGAAAACGAAAAAGCAG AGGCCGAACTCGTCTCTTGGATGGATATTGATGAACAAAATCCCCAATTCTCTCCGCTACTCTATGTTCAGGTCACCAACTTCCAGTGTGGTGGGTACTC AATTGGGATTAGTTCTAGCCTTCTCTTGGCAGACCATTTAATCATGGACAACTTCCTCCCGAGGTGGTCAGGTATTCAAAAGAAATTACTGCTCAACAAC AATGCACTCGAAAAGCCCATATTCTACCTCCCCAATCTCAGAAACACCAGTTTATCTCCTAGTAACACCACGAGGTCCACACCTAGCAAACAGAGTGGCC AGACAACGATATTCAAGATCGCAGGCGATAGCGAAATTGAAGGTGTGCAGAATGAGTTATGCAAGAGAGCCGTATCACATAGCATCCAGGAGGCAGAGCA CAAACAAGGCAGTGAAATGTCATCAGAGTTTTCTTTGTTCGTGAAAGAATCACCTAAGGTTAAAAGGGTCGAGAATTGCAAGAAAAACGAGCTTGTTAAG CCTAATCTGAACTTTAGGTGTCAAGTGATCACCTTGGATGATTTAGGGATCAAAGAATTAGCTTTCCACGATGGCAATGAGCCTACTCACGTTTCTTGCT GGATTGGATCGGCGGTTGCAATGGCGATTCCATCTTCTACTGAGAATACTTCAGACGTCAGCGTTATAGTTACAATCCCTGCAGGAAATTGA
AA sequence Show only first row Show all	>Potri.003G082100.2 pacid=42784791 polypeptide=Potri.003G082100.2.p locus=Potri.003G082100 ID=Potri.003G082100.2.v4.1 annot-version=v4.1 MAMSQISSEFVHKVQIEGVQTVAPSKVTDPRETCLVSVKDPVSSDIFRGCLSIVLCYNKAVEEDSGWLVAGWIKESLGRALQDQPMLSGRLRRVEDGNGE LEMVSNDTGVRLVEAKITMTLQEFLGLEENEKAEAELVSWMDIDEQNPQFSPLLYVQVTNFQCGGYSIGISSSLLLADHLIMDNFLPRWSGIQKKLLLNN NALEKPIFYLPNLRNTSLSPSNTTRSTPSKQSGQTTIFKIAGDSEIEGVQNELCKRAVSHSIQEAEHKQGSEMSSEFSLFVKESPKVKRVENCKKNELVK PNLNFRCQVITLDDLGIKELAFHDGNEPTHVSCWIGSAVAMAIPSSTENTSDVSVIVTIPAGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02890			HXXXD-type acyl-transferase fa...		Potri.003G082100 [exp]	0	1
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Potri.012G143600 [exp]	2.64	0.9985
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Potri.004G019000 [exp]	3.46	0.9981
AT5G45910			GDSL-like Lipase/Acylhydrolase...		Potri.004G054400 [exp]	6.00	0.9973
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Potri.013G007000 [exp]	6.00	0.9969
AT5G04660		CYP77A4	"cytochrome P450, family 77, s...		Potri.008G025500 [exp]	7.07	0.9971
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.019G001200 [exp]	7.41	0.9959
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Potri.015G089700 [exp]	7.87	0.9872
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Potri.016G135700 [exp]	8.36	0.9964
AT5G18020			SAUR-like auxin-responsive pro...		Potri.004G164700 [exp]	9.94	0.9965
AT5G33370			GDSL-like Lipase/Acylhydrolase...		Potri.019G024800 [exp]	10.19	0.9967

Compare expression of checked genes

Potri.003G082100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.