Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17540 203 / 1e-63 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004359 [exp] 239 / 1e-77 AT4G17540 216 / 6e-69 unknown protein Lus10040155 [exp] 233 / 6e-75 AT4G17540 212 / 4e-67 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G082200.3 pacid=42785896 polypeptide=Potri.003G082200.3.p locus=Potri.003G082200 ID=Potri.003G082200.3.v4.1 annot-version=v4.1 ATGGAGAACAGCAGTGGTGGCAGCAGCGATTACAGTAACAGTAGGATTGTAGTGACAAATGAGAAAAAGCCTATGCAAGGAATCAAAATAGAGAATCCCT TTACTTTCAAAGTACTTCAAGTATTTACTGGCTTTGGTTTTGGCTGTGGTATTGGTATTGGTCAAGGCATGCCTGTAAATATGGGTGCATTGCCAATGGT GGGCCAAGTAATGAGTGCAACTAGAGGCGCAACTGATGCCTTTTCTGGAATTACCAGGCATGTAAATACTGCACTTTGGAAGCTGGGAGCTAAGAACATT CAAGCAGGCGTTGGATGTGGAGTTGGTTTCGGCCATGGCTTTGGAATTGGTCTTGCAGTGAAACCTGGGGCAGTGCAGAAGATGCAAGCTTGTTTTCTAG AAGTATTGATGAAGATGATGACAAAACTTGGAATAGCACCCAATTTATCAATTGGTCAAGGTGCCCTTCCAATGTCTTTGCAAAGTGGCGTGAGCATGTT GACTGAATCTTCAATCCAAAACCCATTGGGAAATATTACACAGTTAGCAAGAAAACTCCCAGATCAAACATCTCAAAGTCTGTATGGATATGGAAATGTT AGTTCACATTCAAGTTCTGAAAGTTCCACTTCAAAAGGCAGTGATACTTCTTTTGGTAGCCGAACAGAGAAGGTGATTAGCAGTTTTCTCCAAAATCCTA TTCTGAAAGAAGATGGCACTGACATAAATGAATTGGCTGGACGTTTGCGGTCAGAAAACAACATGCTTCAAATGGTGTTGAGACACCAGCAAATCATTGA AGAGCTAATGGAGGAGAATCAAAAGCTTCGTCAGATACTTGTAGAAGACCTAAAAATACCACCCAACAAGCTCCAGGCCAGTCACTCAACTATAAATAAA TCTCCATGCACTGATTGTTTTGAGTGCCGAAGAAGACAGAGAAAAAAGTAG
AA sequence Show only first row Show all	>Potri.003G082200.3 pacid=42785896 polypeptide=Potri.003G082200.3.p locus=Potri.003G082200 ID=Potri.003G082200.3.v4.1 annot-version=v4.1 MENSSGGSSDYSNSRIVVTNEKKPMQGIKIENPFTFKVLQVFTGFGFGCGIGIGQGMPVNMGALPMVGQVMSATRGATDAFSGITRHVNTALWKLGAKNI QAGVGCGVGFGHGFGIGLAVKPGAVQKMQACFLEVLMKMMTKLGIAPNLSIGQGALPMSLQSGVSMLTESSIQNPLGNITQLARKLPDQTSQSLYGYGNV SSHSSSESSTSKGSDTSFGSRTEKVISSFLQNPILKEDGTDINELAGRLRSENNMLQMVLRHQQIIEELMEENQKLRQILVEDLKIPPNKLQASHSTINK SPCTDCFECRRRQRKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17540			unknown protein		Potri.003G082200 [exp]	0	1
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Potri.006G203700 [exp]	12.64	0.8760
AT1G24610			Rubisco methyltransferase fami...		Potri.008G134200 [exp]	28.24	0.8960
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Potri.003G024000 [exp]	59.74	0.8699
AT4G14190			Pentatricopeptide repeat (PPR)...		Potri.014G149500 [exp]	60.74	0.8509
AT4G27340			Met-10+ like family protein (....		Potri.011G125700 [exp]	70.01	0.8753
AT1G80480		PTAC17	plastid transcriptionally acti...		Potri.001G201400 [exp]	104.93	0.8684
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Potri.014G195600 [exp]	118.49	0.8596
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.014G052000 [exp]	161.83	0.8523
AT4G34412			unknown protein		Potri.004G141400 [exp]	258.30	0.8481

Compare expression of checked genes

Potri.003G082200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.