Plant FIBer expression Database

Potri.003G082300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G082300.2 pacid=42787492 polypeptide=Potri.003G082300.2.p locus=Potri.003G082300 ID=Potri.003G082300.2.v4.1 annot-version=v4.1
ATGGCTTTCTCACGTGCCATGCTCATGCTAACCCTAATGCTAGCTCTCATAGCCACCTCCATTGCTCAAGACTCAATATCATTACCACCAATAATGGCAC
TAACAAGTGTCTCAACCCCACCATCTAGCAGTGCTGCACCCCCATCAAATACACCCACTCCACCACCTGCCATGACACCCCCCCCAGTCTCGTCACCTCC
ACCAATGATGTCCCCACCTCCTTCAGGAACCCCACCAATGAGCCCTGGGAGCCCAAGTTCACCGCCTTCACCAAAGGCTCCTGAAGCACCAGCTCCAGCT
GTGTCGCAACCAGGAAATGGAGCTTTTGTTCATGGAAATAGAATGGCCTTGTCGGCATTGCTTGGAGGAGTAGCATTTCTGTTTGTTTAG
AA sequence
>Potri.003G082300.2 pacid=42787492 polypeptide=Potri.003G082300.2.p locus=Potri.003G082300 ID=Potri.003G082300.2.v4.1 annot-version=v4.1
MAFSRAMLMLTLMLALIATSIAQDSISLPPIMALTSVSTPPSSSAAPPSNTPTPPPAMTPPPVSSPPPMMSPPPSGTPPMSPGSPSSPPSPKAPEAPAPA
VSQPGNGAFVHGNRMALSALLGGVAFLFV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G082300
[exp]
0 1
AT2G23910 NAD(P)-binding Rossmann-fold s... Potri.003G093700
[exp]
1.41 0.9843
AT4G30610 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRE... Potri.018G105700
[exp]
2.00 0.9830 BRS1.1
AT5G50700 HSD1 hydroxysteroid dehydrogenase 1... Potri.015G099900
[exp]
2.44 0.9798
AT2G41940 C2H2ZnF ZFP8 zinc finger protein 8 (.1) Potri.016G060600
[exp]
7.14 0.9807
AT1G29500 SAUR-like auxin-responsive pro... Potri.009G141000
[exp]
8.36 0.9801
AT1G69320 CLE10 CLAVATA3/ESR-RELATED 10 (.1) Potri.010G160600
[exp]
8.48 0.9737 CLE9.1
AT1G44000 unknown protein Potri.005G184700
[exp]
8.71 0.9598
AT5G43700 AUX_IAA IAA4, ATAUX2-11 indole-3-acetic acid inducible... Potri.005G218200
[exp]
10.00 0.9648 Pt-AUX22.4
AT5G16010 3-oxo-5-alpha-steroid 4-dehydr... Potri.010G245266
[exp]
13.26 0.9806
Potri.004G156500
[exp]
15.87 0.9582

Potri.003G082300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.