Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17550 624 / 0 AtG3Pp4 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) AT3G47420 483 / 6e-167 AtG3Pp1, ATPS3 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) AT1G30560 441 / 1e-150 AtG3Pp3 glycerol-3-phosphate permease 3, Major facilitator superfamily protein (.1) AT2G13100 429 / 2e-146 AtG3Pp5 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3) AT4G25220 410 / 1e-138 AtG3Pp2, RHS15 glycerol-3-phosphate permease 2, root hair specific 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G152300 [exp] 837 / 0 AT4G17550 692 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Potri.001G124200 [exp] 492 / 1e-170 AT3G47420 711 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Potri.003G109300 [exp] 488 / 4e-169 AT3G47420 694 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Potri.018G115000 [exp] 436 / 9e-149 AT2G13100 699 / 0.0 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040154 [exp] 682 / 0 AT4G17550 734 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Lus10004358 [exp] 677 / 0 AT4G17550 725 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Lus10031153 [exp] 471 / 8e-163 AT3G47420 695 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10027210 [exp] 465 / 6e-160 AT3G47420 705 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10040002 [exp] 419 / 4e-142 AT2G13100 708 / 0.0 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3) Lus10038923 [exp] 404 / 1e-137 AT3G47420 586 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10027211 [exp] 337 / 1e-112 AT3G47420 454 / 9e-159 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10031729 [exp] 115 / 8e-31 AT3G47420 155 / 2e-46 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.003G082366.2 pacid=42787131 polypeptide=Potri.003G082366.2.p locus=Potri.003G082366 ID=Potri.003G082366.2.v4.1 annot-version=v4.1 ATGGCTAACAATTTAGACACAGCGAGGAATATCCCACCTGGGGTTTGGCTTATAAGGAAAATAAGAGGCAAAGATTGGAGTCTCAAGACTTATAGGTACA TGGTTTTGTTGATTACTTTCATTGCATATACTAGTTACCATGCATCAAGAAAACCCAGTAGCATAGTCAAGAGTGTACTGGATCCTGAACCTGATAAGAC CTTAAATGTGCACCCTTGGCCAATTGGAAGTGTCTTTCTTAAAGATGAAATCTTGGGTAAAAACAAATATAAGTCTGAATATATAGGCTGGGAGCCATTT AATGGGAAAGGCGGGACAAAGAAATTGGGATTGATTGATGTTGCATTTGTTGCTTGTTATTCTTTGGGAATGTATGGTGCTGGTCATTTAGGTGATACAT TGGATTTGAGGTTGTTTTTGACTTCTGGGATGATTGGTAGTGGAATTTTTGTGGGGTTATTCGGTATGGGATACTTTTGGAACATTCATGTTTTCGGGTT TTATTTGGTTATGCAAATGGTTGCTGGGTTGTTTCAAGCCACAGGGTTAATAATGGGTATTTGGAATGCACATACTTCAGTTGGGAATATTACTGGCTCT CTTCTTGCTGCAAGTGTTTTGGACTATGGTTGGGGATGGTCCTTTATTGCTCCGGGAATGTTTATTGCACTAGCAGGGGTATTGGTTTTCTTGTTTTTAG CTGCCTATCCTGAGGATGTTGGATTTCCTTGTTCAAATGTCCCGGCAGCAAGGGTCGAGGCAGTGGCTCGCGATGTAGAAGCTCAGGCACAGAGCGAAGG TATTGTGGAAAAGGGGAAGAATGCTCCCATAAGAGAAGGATCTGGGGTTAGGAGAAGCGTTGGGCTTCTCGAAGCTTGCATGATACCAGGAGTGCTACCA TTTGCATTTTGCCTGTTCTTCGCCAAGCTAGTGGCTTACACATTTTTGTATTGGTTGCCCTTTTATTTGAGTCAGACAGAAATTGGTGGAGAATATATGT CTGTGAAGTCAGCTGGAAATCTCTCAACCCTGTTTGATGTAGGGGGCATTGTTGGTGGAATTCTTGCTGGCCATATATCTGATAAACTTAGAGCTCGGGC TATTACAGCAGCCAGTTTCATGTATGCTGCAATTCCTTCTATGCTTTTGTACCGCATATATGGGAGTTTCTCGCAGACTATGAACATTGTACTCATGATG ATTGCTGGCTTATTCATAAATGGGCCATATGCACTTATCACAACTGCAGTATCTGCTGACCTTGGTACACACAGTTCTCTCAGAGGGGATTCTCGAGCAT TGGCAACAGTCACTGCCATTATTGATGGTACTGGATCAATTGGTGCAGCTCTTGGTCCTCTTCTCACTGGGTTTCTTTCAACTAAAGGATGGAATACAGT TTTTGTGATGCTGATGCTCGGTGCTCTCATTGCGGGGCTTCTCTTATCATGTCAGGTTGTCGCTGAAATTAATGATAAAACTAGTAAATTGATGCGTTCA ACCAGTGGACTGCAAAGTTCTGAAGTTTCTCCATCTCAACCACTTCTAAGTGAGCAGAGATGA
AA sequence Show only first row Show all	>Potri.003G082366.2 pacid=42787131 polypeptide=Potri.003G082366.2.p locus=Potri.003G082366 ID=Potri.003G082366.2.v4.1 annot-version=v4.1 MANNLDTARNIPPGVWLIRKIRGKDWSLKTYRYMVLLITFIAYTSYHASRKPSSIVKSVLDPEPDKTLNVHPWPIGSVFLKDEILGKNKYKSEYIGWEPF NGKGGTKKLGLIDVAFVACYSLGMYGAGHLGDTLDLRLFLTSGMIGSGIFVGLFGMGYFWNIHVFGFYLVMQMVAGLFQATGLIMGIWNAHTSVGNITGS LLAASVLDYGWGWSFIAPGMFIALAGVLVFLFLAAYPEDVGFPCSNVPAARVEAVARDVEAQAQSEGIVEKGKNAPIREGSGVRRSVGLLEACMIPGVLP FAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYMSVKSAGNLSTLFDVGGIVGGILAGHISDKLRARAITAASFMYAAIPSMLLYRIYGSFSQTMNIVLMM IAGLFINGPYALITTAVSADLGTHSSLRGDSRALATVTAIIDGTGSIGAALGPLLTGFLSTKGWNTVFVMLMLGALIAGLLLSCQVVAEINDKTSKLMRS TSGLQSSEVSPSQPLLSEQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17550		AtG3Pp4	glycerol-3-phosphate permease ...		Potri.003G082366 [exp]	0	1
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Potri.013G000400 [exp]	20.59	0.6273
AT3G10910			RING/U-box superfamily protein...		Potri.013G091300 [exp]	21.00	0.6378
AT5G28010			Polyketide cyclase/dehydrase a...		Potri.004G051500 [exp]	23.87	0.6615
AT1G65810			P-loop containing nucleoside t...		Potri.004G077100 [exp]	32.40	0.6166
AT5G45580	GARP		Homeodomain-like superfamily p...		Potri.001G133400 [exp]	41.18	0.6074
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Potri.007G030050 [exp]	42.98	0.5417
AT5G45580	GARP		Homeodomain-like superfamily p...		Potri.003G100100 [exp]	44.89	0.5456
AT1G65810			P-loop containing nucleoside t...		Potri.004G077650 [exp]	60.54	0.5786
AT2G18850			SET domain-containing protein ...		Potri.006G168900 [exp]	80.82	0.5377
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Potri.004G047300 [exp]	119.47	0.5148

Compare expression of checked genes

Potri.003G082366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.