Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47180 281 / 1e-96 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) AT4G00170 152 / 9e-46 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT3G60600 144 / 4e-43 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT2G45140 139 / 2e-40 PVA12 plant VAP homolog 12 (.1) AT2G23830 121 / 6e-35 PapD-like superfamily protein (.1) AT1G08820 122 / 1e-32 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2) AT1G51270 118 / 7e-31 structural molecules;transmembrane receptors;structural molecules (.1.2.3.4) AT4G21450 62 / 2e-11 PapD-like superfamily protein (.1.2.3) AT5G54110 54 / 1e-08 ATMAMI membrane-associated mannitol-induced (.1) AT4G05060 50 / 5e-07 PapD-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G152100 [exp] 323 / 3e-113 AT5G47180 229 / 4e-76 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.002G144800 [exp] 168 / 4e-52 AT4G00170 313 / 5e-109 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Potri.014G060900 [exp] 160 / 6e-49 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.002G144000 [exp] 157 / 7e-48 AT3G60600 298 / 1e-102 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Potri.003G076100 [exp] 143 / 4e-42 AT2G45140 262 / 1e-88 plant VAP homolog 12 (.1) Potri.005G044900 [exp] 135 / 8e-38 AT1G08820 261 / 4e-84 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.001G152000 [exp] 128 / 2e-36 AT2G45140 296 / 6e-102 plant VAP homolog 12 (.1) Potri.013G031400 [exp] 130 / 5e-36 AT1G08820 273 / 5e-89 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.010G031601 [exp] 100 / 1e-24 AT2G45140 112 / 4e-29 plant VAP homolog 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000591 [exp] 271 / 2e-92 AT5G47180 277 / 5e-95 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Lus10011004 [exp] 168 / 9e-53 AT5G47180 167 / 2e-52 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Lus10036495 [exp] 145 / 5e-43 AT4G00170 316 / 4e-110 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10015885 [exp] 141 / 2e-41 AT2G45140 307 / 2e-106 plant VAP homolog 12 (.1) Lus10010360 [exp] 140 / 4e-41 AT4G00170 311 / 5e-108 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10007463 [exp] 140 / 8e-41 AT3G60600 306 / 4e-105 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10008512 [exp] 137 / 7e-40 AT2G45140 296 / 7e-102 plant VAP homolog 12 (.1) Lus10009279 [exp] 144 / 2e-39 AT4G00060 1034 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10028937 [exp] 140 / 8e-39 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10033837 [exp] 128 / 3e-34 AT1G08820 256 / 2e-80 vamp/synaptobrevin-associated protein 27-2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [poplar] [flax] PapD-like PF00635 [poplar] [flax] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Potri.003G082500.1 pacid=42787235 polypeptide=Potri.003G082500.1.p locus=Potri.003G082500 ID=Potri.003G082500.1.v4.1 annot-version=v4.1 ATGACTGCTGGTGATGGAAATCAGTTGATCTCCGTACATCCCGAGGACCTCAAGTTCATTTTTGAGCTGGAAAAGCAAAGCTTTTGTGATCTTAAAGTTG CGAACAACACAGAGCACCATGTTGCTTTTAAGGTTAAAACTACTTCACCTAAGAAGTACTTTGTGAGGCCCAACACTGGTGTTATACAGCCTTGGGATTC TTGCGTCATCAGAGTTACTCTTCAAGCTCAACGAGAATATCCTTCAGATATGCAATGCAAAGATAAGTTTCTCTTACAGAGTACCATTGTGCCTCCACAT GCTGATGTTGATGAGCTCCCACCAGATACTTTCAATAAGGATAGTGATGACAAGGTGATACATGACAGGAAGCTTAGAGTTGTATACATCCCTCCTTCAT CAACTCAAGGAAACTCAGAAGATGAAGGGTTGAAGGGCTCCACTCAAAGTCCTGATGCTAACTCTGCTGTACAGAGCCTGAAGGATGAAAGGGATGCTGC TGTTCGACAAACCCAGCTACTACAGCAGGAACTGGACTTGCTGAGGAGACGAAGATATCGAAAAAGTGATCCAGGCTTCTCCCTCATGTTTGCATTTGTT GTTGGACTTATTGGAATTATGGTTGGCTTCCTCTTGAACCTTTCATTGTCATCACCATCTACAGAATGA
AA sequence Show only first row Show all	>Potri.003G082500.1 pacid=42787235 polypeptide=Potri.003G082500.1.p locus=Potri.003G082500 ID=Potri.003G082500.1.v4.1 annot-version=v4.1 MTAGDGNQLISVHPEDLKFIFELEKQSFCDLKVANNTEHHVAFKVKTTSPKKYFVRPNTGVIQPWDSCVIRVTLQAQREYPSDMQCKDKFLLQSTIVPPH ADVDELPPDTFNKDSDDKVIHDRKLRVVYIPPSSTQGNSEDEGLKGSTQSPDANSAVQSLKDERDAAVRQTQLLQQELDLLRRRRYRKSDPGFSLMFAFV VGLIGIMVGFLLNLSLSSPSTE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47180			Plant VAMP (vesicle-associated...		Potri.003G082500 [exp]	0	1
AT2G33120		ATVAMP722, SAR1	ARABIDOPSIS THALIANA VESICLE-A...		Potri.012G119600 [exp]	5.47	0.8912
AT1G76070			unknown protein		Potri.002G016500 [exp]	5.47	0.8986
AT3G21610			Acid phosphatase/vanadium-depe...		Potri.002G226900 [exp]	6.32	0.8670
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Potri.001G072300 [exp]	7.54	0.8950
AT2G21940		ATSK1	shikimate kinase 1 (.1.2.3.4.5...		Potri.007G081000 [exp]	11.61	0.8797	SK3
AT4G27880			Protein with RING/U-box and TR...		Potri.012G015500 [exp]	12.00	0.8923	SINAT4.2
AT4G27435			Protein of unknown function (D...		Potri.011G122700 [exp]	12.16	0.8962
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Potri.002G052800 [exp]	12.48	0.8884
AT1G32460			unknown protein		Potri.001G145066 [exp]	12.96	0.8515
AT5G17165			unknown protein		Potri.013G081700 [exp]	16.76	0.7478

Compare expression of checked genes

Potri.003G082500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.