Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16970 603 / 0 Protein kinase superfamily protein (.1) AT4G19110 67 / 5e-11 Protein kinase superfamily protein (.1.2.3) AT2G30980 64 / 3e-10 ASKdZeta, ATSK23, BIL1, ATSK2-2 BIN2-LIKE 1, SHAGGY-LIKE PROTEIN KINASE 23, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 2, SHAGGY-related protein kinase dZeta (.1) AT1G06390 64 / 3e-10 ATGSK1, GSK1, ATSK22, BIL2, ATSK2-3 BIN2-LIKE 2, SHAGGY-LIKE PROTEIN KINASE 22, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 3, GSK3/SHAGGY-like protein kinase 1 (.1.2) AT3G48750 62 / 5e-10 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT3G01085 64 / 6e-10 Protein kinase superfamily protein (.1) AT2G17890 62 / 1e-09 CPK16 calcium-dependent protein kinase 16 (.1) AT3G05840 62 / 1e-09 ATSK12 Protein kinase superfamily protein (.1.2) AT5G26751 62 / 1e-09 ATSK11 ,SK 11 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) AT4G28980 62 / 2e-09 CAK1AT, CDKF;1 CYCLIN-DEPENDENT KINASE F;1, CDK-activating kinase 1AT (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G151900 [exp] 1369 / 0 AT4G16970 615 / 0.0 Protein kinase superfamily protein (.1) Potri.003G101600 [exp] 65 / 1e-10 AT4G19110 689 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.017G010200 [exp] 64 / 2e-10 AT2G43790 677 / 0.0 MAP kinase 6 (.1) Potri.006G239900 [exp] 64 / 3e-10 AT4G28880 594 / 0.0 casein kinase I-like 3 (.1) Potri.013G004700 [exp] 63 / 4e-10 AT5G26751 782 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.005G146000 [exp] 62 / 9e-10 AT2G23070 625 / 0.0 Protein kinase superfamily protein (.1) Potri.007G054100 [exp] 62 / 9e-10 AT2G23070 638 / 0.0 Protein kinase superfamily protein (.1) Potri.007G139800 [exp] 62 / 1e-09 AT2G43790 684 / 0.0 MAP kinase 6 (.1) Potri.013G100100 [exp] 62 / 1e-09 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004357 [exp] 679 / 0 AT4G16970 589 / 0.0 Protein kinase superfamily protein (.1) Lus10040153 [exp] 394 / 3e-129 AT4G16970 355 / 1e-115 Protein kinase superfamily protein (.1) Lus10033278 [exp] 70 / 5e-12 AT4G19110 620 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10008303 [exp] 70 / 5e-12 AT4G19110 616 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10038123 [exp] 66 / 8e-11 AT4G19110 555 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001519 [exp] 64 / 4e-10 AT5G26751 790 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Lus10031440 [exp] 64 / 4e-10 AT5G26751 790 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Lus10025395 [exp] 63 / 5e-10 AT4G18710 706 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Lus10040530 [exp] 63 / 6e-10 AT1G18040 593 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10027091 [exp] 63 / 6e-10 AT2G43790 692 / 0.0 MAP kinase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.003G082600.1 pacid=42786472 polypeptide=Potri.003G082600.1.p locus=Potri.003G082600 ID=Potri.003G082600.1.v4.1 annot-version=v4.1 ATGCAAACTCACTCCTCCAACATGCGACTCGCCCTCATCGACTCGCTCGCCACCGCCACTACCTCCACCGAGTCCGATTTGCAAGAGAAGGCATGGCACA TCCTCGGTCTCCTCCTCTCAATCGGCAACCCAACTCCAGCTCTAGAGCTCGCATCTCACTGCACTCTCTTCAATGCATCACCGGATCTCATCGAGTCTCT CTGCTCAATCCCTAACTCACCTATCACTTTGACGTTCAACAGTGACGACTGTAGCAACAGCTTCCTGGTCACCATTTCTCCACTTGGTCTTTTCGCTTTG AATCAATTCGTATCTAATCTCAGCTTGATTGATGCGTTTGCGACTTGGATCCGGACTGCAATCTGCAGGCCCAAGGTTCCTTTGGAGGACGCTGTGAGGA TGTATTTTAGGAAACGGAAGCGAATTGGATATGATCCTGCAGATGTGTACGAGAAGGAACAAGGAGTTTCTACTTCGTCGAAAAGAATTCGAAATGGTTG CAAGACGTTAACTTTTCACTCAAGTGAGGATGTCAACAGGATTAATGTTGAGCCAACTTACATGCCAATCCAGCCAGGTAACTTGATTCTTGCACCTGAC TTGTTCGTTAAAACCATAGTGGGTGAATTAAGTTGCAAATTAAGGGATATCGAACATGAAGAAGGTGAGAGGAATACAAGAGCTATTGTGGAAAGCGGGA AGGATAAGAGAATCATGGCATGTGAGATTGATGAAGAGTCTGCTCTTCCCATTATTAGGTCGGATAATGAAGCTGTATTCCAAGAAGCTAAAGTGAATGA GATAGATCTTGAAAGTAGAGCAGATGTCAATGCTACATGTTGCTTGGATGATGTCAAATGGAGCAGCAGATTATTGTTGGAGTTTACGAGTGTTAATGGT GCTTGTAATGCTATAAATGACTCTCGTGTTGAAACTGTAAGAACTGAAACTAGGGAAGAACTGGTAATTGATTATGGTAAAACGGAAGGAGAAGGCATAA ACCATTTTCAGCAAAGTAATACTGCTTTTGATACGCCACAAGAAAGAAACTTTAGGAGGAATGAGCTGAATTCTCTGGATAAAGAGACAATAACTACTCA CATGAAAAATCAGGTCGAGGCTTCAACTAGTGAGCTCTCTGTCCCCCCGAAGTTGTCAAAAGACCCAAAACCCTCCAACAAGATTAAGGTCACTACTGGT GTTGCTGTGTCTCCAAGACAGCAGACTCTTTGCCAGTCCCTAGATCAAAGGAAGGCTGTTAACCCTCCCAAAGAGAACCAGCACAGGAAAAAAGATCAAA TGAAAAACAGCACGGCACAAAAATCAAAGCAGGCGTGCAATGATACTCATACAAAAGAAAGAAAGAAGGATTGTGCCCTTAATGCTCCCAAGGATTGGGG ATCCAAAGACTTTCCACGCTTTGATTCTTATATTGTTGAAAAGGAAGAAGGCTCGGGTGGTTATGGCACTGTTTACAGGGCAACGAGGAAACATGACGGG ACCACAGTTGCCATCAAATGCCCTCACGAGAATGCTCACAGACACCATGTTATCAACGAACTAAAGATGCTGGAGCGCTTTGGGGGCAAAAATTTTGTAA TAAAATATGAAGGCTGTCTCAAGAACCAAAATTCTGACTGCTTAGTTTTGGCATATGTTGACCATGACAGACCGGAGGTGTTGAAGAAGGAAATAGATGT TTTTCAGCTCCGTTGGTATGGGTATTGCATGTTCAGAGCCCTTGCAACTCTTCATAAGCAGGGAGTGGTCCATAGGGATGTAAAACCTGGCAACTTCCTT TTCTCTTGCAAGGCCAGTAAAGGTTATCTGATCGATTTCAATCTTGCCCTGGATCTGCATCAAAAGCTTGGAGCAATCAACAAATCAAAGGCGGAAAATG ACATAAGCTTCAATAATGTTGCAGTTTCCAATGCCAAATATATTCCTCCATCTAAAAGTAGGAGGTTCCCAGGCACTAAATTCTTGGACGCAGTTGATGT GGGGGCGATTAAAGGCTGGAACTCAACTTTGGAGGCCAAGAATGTAAAAAGGAAGCCTGATAGTAGTATGAAAAGTCAGGGAGCAGATGGCTCTGGCGTA ACCTCAGTCAAGGATGCAACAAGTGCTAGGACTCCTTCAGCAGAAAGGCTGAAAGAGCCTCTGCCATGCCAAGGTAGAAAGGAGCTTATCAGCTTGTTGC ATGAAGCAATGCAGAGTCCAAATCATGAAGCATCTAGTGTTCCGGCTTCTATGAGGAAGAGGATTGCTGCACCTCCTGGAAAAATAGATGGAAGACATAT CTATCTTACTCCAATGCCTCTGCACTCGACTGACATCACAGTTGCTGGCATTGGCTTAGTTAAGAACAAAGGGGATGGGAAGAACAAGAAAGAAGGCCCT TGTGTTGGAACTAAAGGTTTTCGGGCTCCAGAGGTCTTGTTCAGATCTCTCTACCAAGGCCCCAAGGTTGATATTTGGTCTGCTGGGGTCACCATATTAT ACCTGATAATAGGAAAAACGCCCTTTTATGGTGATCCTGAACAGAATATAAAGGATATAGCAAAGTTAAGAGGCAGCGAAGATCTATGGGAAATTTCAAA GCTTCATGACCGGGAATCCTCATTCCCAGTGGACCTGTATAACATGCAATCTTTGCCACCCACGACACTATGGGAGTGGTGCAAGCTGAACTCAAAAAGA CAAGATTTCCTGGATGCAGTGCCAAGCTCACTTATTGACCTGGTGGACAAATGCTTGACGGTGAACCCGAGATTGAGGATTAGTGCAGAGGATGCTCTAA AGCATGAGTTCTTTGCTCCATGCCACGAGAGCCTTCGAAAGCAGAAGCTGCTCAGGCAGGGACTCAGCTTGGATTCTCGAACTAATAATATTCCTTCACA TGGACAAAGCATTGCCAGACCTATCAAAATTTATCAAAGGCAACCCTGA
AA sequence Show only first row Show all	>Potri.003G082600.1 pacid=42786472 polypeptide=Potri.003G082600.1.p locus=Potri.003G082600 ID=Potri.003G082600.1.v4.1 annot-version=v4.1 MQTHSSNMRLALIDSLATATTSTESDLQEKAWHILGLLLSIGNPTPALELASHCTLFNASPDLIESLCSIPNSPITLTFNSDDCSNSFLVTISPLGLFAL NQFVSNLSLIDAFATWIRTAICRPKVPLEDAVRMYFRKRKRIGYDPADVYEKEQGVSTSSKRIRNGCKTLTFHSSEDVNRINVEPTYMPIQPGNLILAPD LFVKTIVGELSCKLRDIEHEEGERNTRAIVESGKDKRIMACEIDEESALPIIRSDNEAVFQEAKVNEIDLESRADVNATCCLDDVKWSSRLLLEFTSVNG ACNAINDSRVETVRTETREELVIDYGKTEGEGINHFQQSNTAFDTPQERNFRRNELNSLDKETITTHMKNQVEASTSELSVPPKLSKDPKPSNKIKVTTG VAVSPRQQTLCQSLDQRKAVNPPKENQHRKKDQMKNSTAQKSKQACNDTHTKERKKDCALNAPKDWGSKDFPRFDSYIVEKEEGSGGYGTVYRATRKHDG TTVAIKCPHENAHRHHVINELKMLERFGGKNFVIKYEGCLKNQNSDCLVLAYVDHDRPEVLKKEIDVFQLRWYGYCMFRALATLHKQGVVHRDVKPGNFL FSCKASKGYLIDFNLALDLHQKLGAINKSKAENDISFNNVAVSNAKYIPPSKSRRFPGTKFLDAVDVGAIKGWNSTLEAKNVKRKPDSSMKSQGADGSGV TSVKDATSARTPSAERLKEPLPCQGRKELISLLHEAMQSPNHEASSVPASMRKRIAAPPGKIDGRHIYLTPMPLHSTDITVAGIGLVKNKGDGKNKKEGP CVGTKGFRAPEVLFRSLYQGPKVDIWSAGVTILYLIIGKTPFYGDPEQNIKDIAKLRGSEDLWEISKLHDRESSFPVDLYNMQSLPPTTLWEWCKLNSKR QDFLDAVPSSLIDLVDKCLTVNPRLRISAEDALKHEFFAPCHESLRKQKLLRQGLSLDSRTNNIPSHGQSIARPIKIYQRQP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16970			Protein kinase superfamily pro...		Potri.003G082600 [exp]	0	1
AT5G12920			Transducin/WD40 repeat-like su...		Potri.001G016800 [exp]	3.87	0.8806
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.006G109200 [exp]	8.12	0.8543
AT3G05480		ATRAD9	cell cycle checkpoint control ...		Potri.013G017500 [exp]	11.48	0.8281
AT4G39630			unknown protein		Potri.005G082500 [exp]	12.24	0.8452
AT1G67040			unknown protein		Potri.004G098300 [exp]	17.94	0.7986
AT1G07860			unknown protein		Potri.009G093700 [exp]	21.67	0.8292
AT5G43670			Sec23/Sec24 protein transport ...		Potri.008G161300 [exp]	22.13	0.8385
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.002G254600 [exp]	24.41	0.8452
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Potri.015G084600 [exp]	28.00	0.7926
AT3G54070			Ankyrin repeat family protein ...		Potri.014G058100 [exp]	32.24	0.8042

Compare expression of checked genes

Potri.003G082600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.