Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47120 300 / 2e-103 ATBI-1, ATBI1 ARABIDOPSIS BAX INHIBITOR 1, BAX inhibitor 1 (.1) AT4G17580 185 / 2e-58 Bax inhibitor-1 family protein (.1) AT5G47130 111 / 3e-30 Bax inhibitor-1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G151800 [exp] 341 / 1e-119 AT5G47120 310 / 2e-107 ARABIDOPSIS BAX INHIBITOR 1, BAX inhibitor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000589 [exp] 294 / 1e-100 AT5G47120 339 / 2e-118 ARABIDOPSIS BAX INHIBITOR 1, BAX inhibitor 1 (.1) Lus10011006 [exp] 293 / 3e-100 AT5G47120 333 / 5e-116 ARABIDOPSIS BAX INHIBITOR 1, BAX inhibitor 1 (.1) Lus10000097 [exp] 192 / 9e-62 AT5G47120 226 / 5e-75 ARABIDOPSIS BAX INHIBITOR 1, BAX inhibitor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0453 [poplar] [flax] Apoptosis-Inhib PF01027 [poplar] [flax] Bax1-I Inhibitor of apoptosis-promoting Bax1
Representative CDS sequence Show only first row Show all	>Potri.003G082700.1 pacid=42784520 polypeptide=Potri.003G082700.1.p locus=Potri.003G082700 ID=Potri.003G082700.1.v4.1 annot-version=v4.1 ATGGAATCGTTCGCTTCCTTCTTTGACTCTGAATCGTCTTCAAGGAATCGTTGGAGCTACGACTCTCTCAAGAACTTCCGTCAGATCTCGCCTGTAGTCC AGACTCATCTCAAGCAGGTTTATCTGACTTTATGTTGTGCACTGGTTGCATCGGCCGCTGGGGCATACCTCCATATTCTGTGGAACATTGGTGGTCTATT AACAACTTTTGCATGCTTTGGATGCATGACTTGGCTACTTTCCATATCTCCTTATGAAGAGCGAAAGAGGCTTGCTCTCTTGATGGCAGCTGCACTCTTT GAAGGGGCATCCATCGGTCCTCTGATTGATTTGGCCATTCAGATTGATCCAAGTGTTCTGATTACGGCATTTGTGGGAACAGCGGTGGCATTTGGATGTT TCTCAGCTGCAGCTATGTTGGCTAGGCGTAGAGAATATCTTTACTTGGGTGGCTTGCTTTCCTCTGGCCTGTCTATCCTTCTATGGGTGCACTTTGCATC CTCCATCTTTGGGGGATCTGCAGCCCTCTTTAAATTTGAGCTGTATTTTGGGCTTCTGGTGTTTGTGGGCTATGTGGTGGTTGACACCCAGGATATCATT GAGAAAGCTCACCTTGGTGATCGGGACTATGTGAAGCATGCCCTGAAGCTTTTCACTGACTTTGTTGCTGTGTTTGTCCGAATTCTTATAATCATGTTAA AGAATTCAACTGAGAAGGAGAAGAAGAAGAAAAGAAGAGATTGA
AA sequence Show only first row Show all	>Potri.003G082700.1 pacid=42784520 polypeptide=Potri.003G082700.1.p locus=Potri.003G082700 ID=Potri.003G082700.1.v4.1 annot-version=v4.1 MESFASFFDSESSSRNRWSYDSLKNFRQISPVVQTHLKQVYLTLCCALVASAAGAYLHILWNIGGLLTTFACFGCMTWLLSISPYEERKRLALLMAAALF EGASIGPLIDLAIQIDPSVLITAFVGTAVAFGCFSAAAMLARRREYLYLGGLLSSGLSILLWVHFASSIFGGSAALFKFELYFGLLVFVGYVVVDTQDII EKAHLGDRDYVKHALKLFTDFVAVFVRILIIMLKNSTEKEKKKKRRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Potri.003G082700 [exp]	0	1
AT2G46080			unknown protein		Potri.014G088600 [exp]	1.41	0.9393
AT3G52105			unknown protein		Potri.009G061800 [exp]	1.73	0.9506
AT1G66070			Translation initiation factor ...		Potri.004G082200 [exp]	4.24	0.9095
AT4G29520			unknown protein		Potri.018G067300 [exp]	4.35	0.8933
AT3G53830			Regulator of chromosome conden...		Potri.016G101700 [exp]	11.53	0.8520
AT2G20560			DNAJ heat shock family protein...		Potri.007G136266 [exp]	11.87	0.9291
AT1G07400			HSP20-like chaperones superfam...		Potri.018G140600 [exp]	15.93	0.8528	Pt-HSP17.2
AT2G20560			DNAJ heat shock family protein...		Potri.011G057601 [exp]	20.37	0.9181
AT3G13570		SCL30A, At-SCL3...	SC35-like splicing factor 30A ...		Potri.016G062500 [exp]	22.31	0.8411
AT3G06600			unknown protein		Potri.010G147301 [exp]	24.65	0.8815

Compare expression of checked genes

Potri.003G082700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.