Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17570 478 / 6e-165 GATA GATA26 GATA transcription factor 26 (.1.2.3) AT5G47140 404 / 1e-136 GATA GATA27 GATA transcription factor 27 (.1) AT3G45170 58 / 2e-09 GATA GATA14 GATA transcription factor 14 (.1) AT2G28340 53 / 3e-07 GATA GATA13 GATA transcription factor 13 (.1) AT4G36240 52 / 4e-07 GATA GATA7 GATA transcription factor 7 (.1) AT5G66320 52 / 4e-07 GATA GATA5 GATA transcription factor 5 (.1.2) AT3G51080 52 / 5e-07 GATA GATA6 GATA transcription factor 6 (.1) AT1G08010 50 / 1e-06 GATA GATA11 GATA transcription factor 11 (.1.2) AT5G49300 48 / 2e-06 GATA GATA16 GATA transcription factor 16 (.1) AT3G24050 49 / 3e-06 GATA GATA1 GATA transcription factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G151700 [exp] 979 / 0 AT4G17570 485 / 1e-167 GATA transcription factor 26 (.1.2.3) Potri.007G116550 [exp] 53 / 2e-07 AT3G21175 228 / 3e-73 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.003G174800 [exp] 52 / 5e-07 AT3G24050 167 / 6e-51 GATA transcription factor 1 (.1) Potri.004G211800 [exp] 51 / 8e-07 AT1G08010 150 / 4e-43 GATA transcription factor 11 (.1.2) Potri.001G188500 [exp] 51 / 1e-06 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.001G053500 [exp] 50 / 1e-06 AT3G24050 171 / 4e-52 GATA transcription factor 1 (.1) Potri.007G016600 [exp] 51 / 2e-06 AT3G51080 179 / 2e-53 GATA transcription factor 6 (.1) Potri.005G117600 [exp] 50 / 2e-06 AT5G66320 236 / 2e-75 GATA transcription factor 5 (.1.2) Potri.009G123400 [exp] 50 / 3e-06 AT5G66320 179 / 8e-54 GATA transcription factor 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011008 [exp] 662 / 0 AT4G17570 470 / 5e-162 GATA transcription factor 26 (.1.2.3) Lus10000587 [exp] 566 / 0 AT4G17570 394 / 1e-131 GATA transcription factor 26 (.1.2.3) Lus10011010 [exp] 428 / 7e-144 AT4G17570 294 / 3e-92 GATA transcription factor 26 (.1.2.3) Lus10038273 [exp] 56 / 5e-08 AT4G32890 219 / 1e-69 GATA transcription factor 9 (.1) Lus10037398 [exp] 55 / 5e-08 AT1G08010 169 / 1e-50 GATA transcription factor 11 (.1.2) Lus10031096 [exp] 51 / 8e-08 AT5G66320 137 / 1e-40 GATA transcription factor 5 (.1.2) Lus10041313 [exp] 54 / 1e-07 AT1G08010 163 / 2e-48 GATA transcription factor 11 (.1.2) Lus10028178 [exp] 54 / 1e-07 AT2G45050 204 / 3e-65 GATA transcription factor 2 (.1) Lus10016092 [exp] 53 / 2e-07 AT1G08010 159 / 2e-47 GATA transcription factor 11 (.1.2) Lus10021466 [exp] 52 / 2e-07 AT1G08010 157 / 2e-46 GATA transcription factor 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00320 [poplar] [flax] GATA GATA zinc finger CL0167 [poplar] [flax] PF13919 [poplar] [flax] ASXH Asx homology domain
Representative CDS sequence Show only first row Show all	>Potri.003G082800.1 pacid=42785467 polypeptide=Potri.003G082800.1.p locus=Potri.003G082800 ID=Potri.003G082800.1.v4.1 annot-version=v4.1 ATGGGCAAACAAGGACCTTGCTGTCACTGTGGAGTTACAAGCACACCTCTTTGGCGCAATGGGCCTCCTGAAAAGCCAGTGCTGTGCAATGCATGTGGAT CACGATGGAGGACAAAGGGAACACTAGCAAACTATACCCCTCTTCATGCTAGGGCTGAACCTGATGATTATGAGGATCACAGGGTCTCTAGATTGAAGAG TGTGTCTATAAGCAAGAACAAAGAAGTGAAACTGCTCAAGAGAAAGCCGAATTATGACAATAGGGTTGCTCTGGATTACAACCAAGGTTATAGAAAGGTT GTAGATGAGGACACTAGTAATAGGTCAAGTTCTGGGTCAGCCATATCCAACCCGGAGAGTTGTGCACAATTTGGCAGTGCAGAAGCAAGTGATTTGACAG GTCCAGCCCAATCAGTTGTGTGGGACTCTTTGGTACCTTCTAGGAAGAGGACCTGTGTCAATCGGCCAAAGCCATCTTCAGTTGAGAAGCTTACAAAAGA TCTATATACTATTTTGCATGAGCAGCAGTCGTCATGCTTCTCTGGCTCTTCAGAAGAGGATTTACTTTTTGACAATGAAACTCCAATGGTTTCTGTTGAG ATAGGACATGGAAGTGTTCTCATTAGACATCCAAGCTCAATAGCTCGAGATGAGGAATCTGAAGCTAGCTCTCTTTCTGTTGAGAACAAACAATATTTGA CAAATGAGGCTTATTCTCATCCTGTGATACTTCCTGTACATAATGAAAACAAGAGTGTCAATACAACATATCCTATTACTGAAACAACTAAGAATCTCAC GGGACAAGGGATGCAGCAAGAGCAACTTAAGAGGGACAAGTTTCCACATGAAAAAGTACATATCCTGGGAAGTCATAATTCACCACTTTGCAGCATAGAT TTGAATGATATTCTTAACTTTGAGGAGTTTGCAAGGCACTTGACAAATGAAGAGCAACAGCAATTACTAAAATATCTACCTCCACTCGATACTACCAAAC TTCCCAACAGCATCGAAAGCATGTTTGATAGCCCTCAATTCAAGGAAAACATAAATTCCTATCAGCAACTGCTTTCAGAAGGAGTCTTTGATCTGTCCTT CTCAGAAGCAAAAACTGAAGACTGTAAAACTTTGAAAAGGCTCACACTGTCCAATTTTTTGAAATCCAAATGGGTGGAGCGTTATCATCTACTCAAGAAG TGTAAAAATAGTAATGGGAAGTCTTTTGTTGGAAAGGGACCAAATCCAGATGTTGTTGCAATGAGTAATATAGCTGGTGCCAAAAGATCACGTGACAGCC CTAGTCAGAAGTTTTCAGAAGTGAAGTTAATGAAGAGCCCCAAAAGGATTATCATGAAGGCTACGTATGAGAACAAAGAACTCATAGACAATGATGGATC TTGCTTTAGTCCAAGAAGCCTATTTGCCCTGCCTACTGATGGTAGCTCCCTCATGCTGGATTCTCTCCATTTTGTGGATGAAAGTTCTGATCAGGACCTG CTGCTGGACATCCCATCCAATGGTTCATTTGCACAGGCAGAGCTCTTTTACCCAACTAATAGTTTTGGTCAACAGGCAAGCACTAGTAGTAGCTCAATAT ACCCGCACCTAGGCCGCCCCTAA
AA sequence Show only first row Show all	>Potri.003G082800.1 pacid=42785467 polypeptide=Potri.003G082800.1.p locus=Potri.003G082800 ID=Potri.003G082800.1.v4.1 annot-version=v4.1 MGKQGPCCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDHRVSRLKSVSISKNKEVKLLKRKPNYDNRVALDYNQGYRKV VDEDTSNRSSSGSAISNPESCAQFGSAEASDLTGPAQSVVWDSLVPSRKRTCVNRPKPSSVEKLTKDLYTILHEQQSSCFSGSSEEDLLFDNETPMVSVE IGHGSVLIRHPSSIARDEESEASSLSVENKQYLTNEAYSHPVILPVHNENKSVNTTYPITETTKNLTGQGMQQEQLKRDKFPHEKVHILGSHNSPLCSID LNDILNFEEFARHLTNEEQQQLLKYLPPLDTTKLPNSIESMFDSPQFKENINSYQQLLSEGVFDLSFSEAKTEDCKTLKRLTLSNFLKSKWVERYHLLKK CKNSNGKSFVGKGPNPDVVAMSNIAGAKRSRDSPSQKFSEVKLMKSPKRIIMKATYENKELIDNDGSCFSPRSLFALPTDGSSLMLDSLHFVDESSDQDL LLDIPSNGSFAQAELFYPTNSFGQQASTSSSSIYPHLGRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Potri.003G082800 [exp]	0	1
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.001G260700 [exp]	2.00	0.8296
AT5G01720			RNI-like superfamily protein (...		Potri.006G105400 [exp]	4.12	0.8491
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.001G036800 [exp]	11.13	0.8388	SUVH3.4,SDG950
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Potri.003G204400 [exp]	12.00	0.7712
					Potri.006G088500 [exp]	14.69	0.8171
AT1G69060			Chaperone DnaJ-domain superfam...		Potri.010G139100 [exp]	14.79	0.8349
AT5G47580		ASG7	ALTERED SEED GERMINATION 7, un...		Potri.003G110700 [exp]	15.19	0.7948
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G019100 [exp]	15.29	0.8261	CNGC.1
AT2G22430	HD	ATHB6	homeobox protein 6 (.1)		Potri.007G097100 [exp]	17.60	0.8176
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.009G022900 [exp]	18.97	0.8177

Compare expression of checked genes

Potri.003G082800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.