Plant FIBer expression Database

Potri.003G083000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G083000.2 pacid=42787420 polypeptide=Potri.003G083000.2.p locus=Potri.003G083000 ID=Potri.003G083000.2.v4.1 annot-version=v4.1
ATGCTTAATTTGGAACAGGAACCTCTCCATTTGAGGGAATATCGATCAGACACCATGCATACGTTCTCGAGATATCCTTCGATCTCGTCTCTCTTCCTCC
TTGCTCTCGTTATCACCATCCTTTGTTCCCCTCTCACCGTCCGATCATGGGATCCTATTGATGACGTTGTTGGCTCAGCCAAAGATACAGTGGGATCCGC
CATGAACGAAACCACAAGCTTCGCTGGAAACGTCATCAACAGCACCACAAATGCCTACAATTACACCAAGGACGCTGCTGAAGACGTCGCCAAAGTCGCC
AATGGATCCCCCGCTTTCCTTGCTGCAGCTGGTCAGGGGCCTCTAGCTTTGGTGGCTGCCGTGCTTATTGGCCTGTCTGTGCTTTTCTGA
AA sequence
>Potri.003G083000.2 pacid=42787420 polypeptide=Potri.003G083000.2.p locus=Potri.003G083000 ID=Potri.003G083000.2.v4.1 annot-version=v4.1
MLNLEQEPLHLREYRSDTMHTFSRYPSISSLFLLALVITILCSPLTVRSWDPIDDVVGSAKDTVGSAMNETTSFAGNVINSTTNAYNYTKDAAEDVAKVA
NGSPAFLAAAGQGPLALVAAVLIGLSVLF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G083000
[exp]
0 1
AT1G33720 CYP76C6 "cytochrome P450, family 76, s... Potri.001G109300
[exp]
1.41 0.9789
AT5G44670 Domain of unknown function (DU... Potri.003G156600
[exp]
2.00 0.9754
AT4G36790 Major facilitator superfamily ... Potri.007G030800
[exp]
2.44 0.9760
AT5G60490 FLA12 FASCICLIN-like arabinogalactan... Potri.009G012200
[exp]
2.82 0.9783 FLA14.12
AT1G49960 Xanthine/uracil permease famil... Potri.009G086800
[exp]
3.16 0.9732
AT3G18380 SHH2 SAWADEE homeodomain homolog 2,... Potri.001G373300
[exp]
4.12 0.9305
AT1G11040 HSP40/DnaJ peptide-binding pro... Potri.005G179400
[exp]
4.35 0.9278
AT2G22620 Rhamnogalacturonate lyase fami... Potri.014G004500
[exp]
5.29 0.9595
AT5G60490 FLA12 FASCICLIN-like arabinogalactan... Potri.019G121100
[exp]
6.92 0.9400
AT5G60490 FLA12 FASCICLIN-like arabinogalactan... Potri.019G120800
[exp]
7.21 0.9395 FLA14.5

Potri.003G083000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.