Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35160 678 / 0 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT2G22740 667 / 0 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT5G04940 379 / 8e-119 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT1G73100 361 / 3e-112 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT5G13960 350 / 2e-108 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT4G13460 349 / 6e-108 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G33290 325 / 6e-99 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT1G17770 283 / 5e-83 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT2G24740 281 / 1e-81 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT5G47150 177 / 3e-49 YDG/SRA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G025300 [exp] 388 / 2e-122 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.006G027600 [exp] 387 / 4e-122 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.001G036800 [exp] 385 / 5e-121 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G188700 [exp] 379 / 5e-119 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.008G173100 [exp] 378 / 2e-118 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.010G064300 [exp] 372 / 5e-116 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.002G237950 [exp] 362 / 2e-112 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.014G143900 [exp] 333 / 2e-101 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G162801 [exp] 335 / 3e-101 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011011 [exp] 656 / 0 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 643 / 0 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10040150 [exp] 600 / 0 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10041515 [exp] 382 / 1e-119 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10031984 [exp] 377 / 2e-117 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10008681 [exp] 373 / 9e-117 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10029470 [exp] 370 / 3e-115 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10026137 [exp] 357 / 1e-110 AT1G73100 757 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10023714 [exp] 345 / 3e-106 AT4G13460 759 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Lus10035115 [exp] 343 / 6e-105 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain CL0178 [poplar] [flax] PUA PF02182 [poplar] [flax] SAD_SRA SAD/SRA domain CL0178 [poplar] [flax] PF05033 [poplar] [flax] Pre-SET Pre-SET motif
Representative CDS sequence Show only first row Show all	>Potri.003G083100.3 pacid=42784814 polypeptide=Potri.003G083100.3.p locus=Potri.003G083100 ID=Potri.003G083100.3.v4.1 annot-version=v4.1 ATGGAGTCTACGAGGGTGGTATCTTCCGATAAATCTGGGATGTGCTCCATGGAAAATGGTGATGTTGCTCCCAAGTTCAAAAGGCGGAGAGTTTCTGCTG TCCGGGATTTCCCCCCTGGCTGTGGACCATTGGCTGTTCTGATTTTTAAACAAAATGAAAAATTTGTTGCAGCGAGTAAGGAGAAAAGTGGTGATGGCTG TCTTGAAAAAATAAATCGTGTGGAAACCAAGGGAAAGGAGCCGATAGATTCTTCAGATCAGGTGAATGGGCATGGATTGGTGAAGCAAGAGCCTGCAGGG ATGTTGCTTCCAGAGGCTGTAGGTGCTTTGAATGATGTAAGTGTGGTTGGATCGGTAGGAGCTTCTGTTGTGGGTGAAGCAGTAAAAGCTTTAGAACATG AAACTGCTGATGCATCAGAGAATCTGTGTAAGGTGGATGTTGTTGCTCCAGTTGAAAATTTTGTCCAGCACAATTATCCTCCTCGGAGAAGAATCTCTGC TGTCAGAGACTTCCCTCCATTTTGTGGACCTAATGCTCCGCTTCTTAACAAGGAAGAGGCTGCGAAAGTGCTGGTTGTTGTGCAGAAGAAGAGTTTGGAT CAAGAGAAGTCTGGCACCGAAGAAAATCCAACAAAAGAAATGGTGAAGAATGTTGTGAAAGAAATGGGTAATGATGTTAAAGATGGAGATCTTAATGAAA GCAGATTAGAAAGTGCTTCTAGGATGGATGACGATAAAGTTAGAATTGAACCTGATTCTTCTGTGAATAAGGTGAAGGTAGCTGAAGAGAATAGACATGA AAGGTGCATCAAATCTCCTCGAGTAATCATTCTAAATCAGCATGACCTGAATTCCACGGCAGTCTCTAAATCAGTCAAAATGGAAGTTGGTGGTCTAGAA GAGAATCAGGGTAAGGACCTTACAGTTTACTTGGAGGATAAAAGTTCCAAGAGAAAGCTTTCAGACCTATCTGGTGGTAAGAATTCAATGTGTAAAGACA AGTTTGAGGTTTTGAAGCTTGCATCAGGTAGGGAAGTAGTGCAGGGTCTTCCGGCTGAACGGAATTGTCCATGGAGGAAGGGGCAGATGGTGCATAAACC TACTATGTTGGCTGGTGATGCAAGAGAAAGCAAAGGTCAGAAACATAATTTCATATTGCTCGAACGATCAAAATCTGCTTTGAAAACGAAGATAAATGAG TTAGGCAAACATGGAGGAATTATGAAAAAGAACTCATCTCCCACTATAAAGGTGGAAGGAGGTGTGGGCCAAAAGACTGAATGTAACAAAGAAGATTATC TGGAAAATGGTGAGGAATCCGATGATTTTCGTGTAGTTGCACGATCACACAATTTTGATGTGAGCCTTCCTCCATCCTGTCCCACCATTTCACATGGCAA AGGTAATGGCAATGATGCAGTCGTTACTAGAAACAAAGTGAGGGAGACATTGCGTTTGTTCCAGGCTATCTGTAGGAAGCTCTTGCATGAAGAAGAAGCA AATTTCAAGGAGCGAGGAAATACTCGTAGGAGGGTTGATTTACAAGCATCAAAGATTCTTAAGGAGAAAGGAAAATATGTCAACATAGGTGAGCGCATTA TTGGTTCTGTCCCAGGAGTTGAAGTTGGTGATGAGTTTATTTACAGGGTGGAGCTTAATATTGTTGGCCTGCATCGCCAAATTCAGGGTGGTATAGATTA TATGAAACAAGATGGAAAACTCCTTGCGACAAGTATTGTATCATCTGGGGCCTATGATGACGACACAGATAACTCAGATGTCTTGATTTACACAGGTTCT GGAGGCAACATGATGAGTGGAGACAAGGAACCTGAAGATCAGAAGCTTGAGAGAGGTAATCTAGCTTTGAAGAACAGCATGGATGCAAAGAATCCTGTAA GGGTGATTCGTGGTGATTCAAAGGGGGCTGATTCAGTTGATGCAAGAGGGAGGACCTATATCTATGATGGGTTGTATCTGGTGGAGAAGTGCTGGCAGGA AATAGGGTCACATGGTAAGTTGGTGTTTAAGTTTAAGCTGGTTCGAATTCAAGGTCAACCAGAGCTTGCTTGGAATGTAGTGAAGAAGTCCAAAAAATTT AAAGTGCGGGAGGGTGTCTGTGTAGATGATATCTCACAGGGGAAAGAGAAAATTCCCATTTGTGCTGTGAACACCATAAATGATGAGAAGCCTCCACCAT TTAAATACACAACTCATATGATATATCCTCATTGGTGTCGCCGTTTGCCTCCCAAGGGCTGTGATTGTATTAATGGATGCTCTGAATCTAGGAAATGTCC TTGTCTGGAAAAGAATGGAGGAGGGATCCCATATAACTATAATGGCGCAATAGTGGAAGCGAAGCCCCTAGTGTATGAGTGTGGTCCTTCTTGCAAGTGT CCTCCTTTATGCTACAATAGAGTCAGTCAGCATGGTATCAAATTTCAGCTTGAAATCTTTAAAACTGAATCAAGGGGATGGGGCGTGAGATCTTTAAATT CAATTCCTTCAGGAAGTTTTATCTGTGAGTATGCAGGCGAGGTCCTTGAAGAGAAAGAAGCTGAACAAAGAACTGGTAACGATGAGTATTTGTTTGATAT TGGAAATCAGTTCAATGACAATTCTCTTTGGGATGGACTTACAACCCTCATGCCTGAAGCACAGCCAGATGCTGTTGTAGAAGTGCAGAACAGTGGCTTC ACCATTGATGCAGCACAGTGTGGTAACGTGGGGAGATTCATTAACCACAGTTGCTCCCCAAATCTTTATGCCCAAAATGTTCTTTATGACCATGATGACA AAAGAATTCCTCACATAATGTTCTTTGCTGTCGAGAACATTCCTCCCTTGCAAGAGCTCACTTACCATTACAATTACATGATAGATCAGGTTTTTGACTC CAATGGCAATATAAAGAAGAAGAGTTGCCATTGTGGTTCTCCAGAGTGCACTGGTAGGATGTATTGA
AA sequence Show only first row Show all	>Potri.003G083100.3 pacid=42784814 polypeptide=Potri.003G083100.3.p locus=Potri.003G083100 ID=Potri.003G083100.3.v4.1 annot-version=v4.1 MESTRVVSSDKSGMCSMENGDVAPKFKRRRVSAVRDFPPGCGPLAVLIFKQNEKFVAASKEKSGDGCLEKINRVETKGKEPIDSSDQVNGHGLVKQEPAG MLLPEAVGALNDVSVVGSVGASVVGEAVKALEHETADASENLCKVDVVAPVENFVQHNYPPRRRISAVRDFPPFCGPNAPLLNKEEAAKVLVVVQKKSLD QEKSGTEENPTKEMVKNVVKEMGNDVKDGDLNESRLESASRMDDDKVRIEPDSSVNKVKVAEENRHERCIKSPRVIILNQHDLNSTAVSKSVKMEVGGLE ENQGKDLTVYLEDKSSKRKLSDLSGGKNSMCKDKFEVLKLASGREVVQGLPAERNCPWRKGQMVHKPTMLAGDARESKGQKHNFILLERSKSALKTKINE LGKHGGIMKKNSSPTIKVEGGVGQKTECNKEDYLENGEESDDFRVVARSHNFDVSLPPSCPTISHGKGNGNDAVVTRNKVRETLRLFQAICRKLLHEEEA NFKERGNTRRRVDLQASKILKEKGKYVNIGERIIGSVPGVEVGDEFIYRVELNIVGLHRQIQGGIDYMKQDGKLLATSIVSSGAYDDDTDNSDVLIYTGS GGNMMSGDKEPEDQKLERGNLALKNSMDAKNPVRVIRGDSKGADSVDARGRTYIYDGLYLVEKCWQEIGSHGKLVFKFKLVRIQGQPELAWNVVKKSKKF KVREGVCVDDISQGKEKIPICAVNTINDEKPPPFKYTTHMIYPHWCRRLPPKGCDCINGCSESRKCPCLEKNGGGIPYNYNGAIVEAKPLVYECGPSCKC PPLCYNRVSQHGIKFQLEIFKTESRGWGVRSLNSIPSGSFICEYAGEVLEEKEAEQRTGNDEYLFDIGNQFNDNSLWDGLTTLMPEAQPDAVVEVQNSGF TIDAAQCGNVGRFINHSCSPNLYAQNVLYDHDDKRIPHIMFFAVENIPPLQELTYHYNYMIDQVFDSNGNIKKKSCHCGSPECTGRMY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Potri.003G083100 [exp]	0	1
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.012G080200 [exp]	1.73	0.7439
AT1G23170			Protein of unknown function DU...		Potri.017G124300 [exp]	15.29	0.6429
					Potri.005G127650 [exp]	32.49	0.5836
AT3G13340			Transducin/WD40 repeat-like su...		Potri.006G000500 [exp]	33.70	0.5655
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.002G070000 [exp]	34.46	0.6136
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.005G131200 [exp]	40.34	0.6309	XLG.1
AT5G45500			RNI-like superfamily protein (...		Potri.019G036900 [exp]	42.19	0.6494
AT5G47020			unknown protein		Potri.003G086200 [exp]	43.31	0.6527
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Potri.001G219700 [exp]	43.58	0.6109	AGO903,AGO4.1
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Potri.014G164400 [exp]	57.44	0.5889

Compare expression of checked genes

Potri.003G083100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.