Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrEXLB1,EXLB1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17030 311 / 1e-107 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT4G38400 177 / 1e-54 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1) AT3G45960 174 / 2e-54 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2) AT3G45970 171 / 2e-52 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT1G65680 127 / 2e-35 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT4G28250 120 / 9e-33 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT2G20750 115 / 7e-31 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT2G45110 103 / 2e-26 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT2G40610 98 / 2e-24 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT1G65681 96 / 8e-24 EXPB6 beta expansin 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G151500 [exp] 452 / 3e-163 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.003G087000 [exp] 215 / 9e-70 AT4G17030 183 / 3e-57 expansin-like B1 (.1) Potri.001G147200 [exp] 214 / 1e-69 AT4G17030 180 / 4e-56 expansin-like B1 (.1) Potri.009G141400 [exp] 202 / 2e-64 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.004G181700 [exp] 196 / 2e-62 AT4G38400 348 / 3e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.014G066300 [exp] 119 / 2e-32 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.013G134300 [exp] 117 / 1e-31 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.019G101900 [exp] 117 / 1e-31 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.001G001100 [exp] 97 / 3e-24 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001009 [exp] 375 / 8e-133 AT4G17030 308 / 2e-106 expansin-like B1 (.1) Lus10011013 [exp] 368 / 3e-130 AT4G17030 302 / 2e-104 expansin-like B1 (.1) Lus10000958 [exp] 357 / 9e-126 AT4G17030 303 / 1e-104 expansin-like B1 (.1) Lus10000957 [exp] 266 / 6e-90 AT4G17030 226 / 2e-74 expansin-like B1 (.1) Lus10040149 [exp] 262 / 2e-88 AT4G17030 221 / 2e-72 expansin-like B1 (.1) Lus10001010 [exp] 261 / 6e-88 AT4G17030 223 / 6e-73 expansin-like B1 (.1) Lus10011012 [exp] 256 / 5e-86 AT4G17030 219 / 2e-71 expansin-like B1 (.1) Lus10030931 [exp] 221 / 5e-72 AT4G17030 183 / 2e-57 expansin-like B1 (.1) Lus10023968 [exp] 188 / 4e-59 AT3G45970 301 / 4e-103 EXPANSIN L1, expansin-like A1 (.1) Lus10001244 [exp] 189 / 5e-59 AT4G17030 153 / 3e-45 expansin-like B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.003G083200.1 pacid=42787356 polypeptide=Potri.003G083200.1.p locus=Potri.003G083200 ID=Potri.003G083200.1.v4.1 annot-version=v4.1 ATGGGATTTGCATTTAAATATGGCTATTCCCTTCTTTGTATCATGGCACTTCTGCCTGCAATAAGTTACTCCCAAGACTACACATTCTCAAGAGCAACTT ATTATGGTAGCCCTGATTGCTTAGGGACACCATCTGGAGCTTGCGGGTTTGGAGAATATGGAAGGACGGTCAACGATGCTAATGTGGCCGGGGTTTCAAG ACTCTACAAGAATGGCACTGGCTGCGGTGGTTGCTATCAGGTTAGGTGCAAAGCACCAAATCTTTGCACCGATGATGGGGTAAACGTAGTGGTTACTGAC TATGGTGAAGGAGACAAAACTGACTTCATCCTCAGCCCACGCGCCTATGCAAGAATGGCACATCCAAACATGGCCGTAGAACTGATTGCGTACGGTGTTG TCGATGTAGAATTCCGGAGGATCCCTTGCCGTTACTCCGGTTATAACCTCATGTTCAAGGTCCATGAGCATAGCAGGTTTCCTGATTACTTGGCTATAAT TCTCTTGTACCAAGCTGGCCAAAATGAAATTTTAGCTGTGGAGTTATGGCAGGAGGATTGCAAGGAATGGAGAGGCATGAGAAGAGCCTATGGGGCAGTG TGGGATATGCCTAACCCACCTAAGGGTGCCATCAGCTTGAGGTTCCAAGTAAGTGGCAGTGCAGGCGTCACATATTGGGCCCAAGCAGCAAATGTTATAC CGAGTGATTGGAAGGCTGGGATTGCTTATGACTCTACCGTTCAGCTTTCTTAA
AA sequence Show only first row Show all	>Potri.003G083200.1 pacid=42787356 polypeptide=Potri.003G083200.1.p locus=Potri.003G083200 ID=Potri.003G083200.1.v4.1 annot-version=v4.1 MGFAFKYGYSLLCIMALLPAISYSQDYTFSRATYYGSPDCLGTPSGACGFGEYGRTVNDANVAGVSRLYKNGTGCGGCYQVRCKAPNLCTDDGVNVVVTD YGEGDKTDFILSPRAYARMAHPNMAVELIAYGVVDVEFRRIPCRYSGYNLMFKVHEHSRFPDYLAIILLYQAGQNEILAVELWQEDCKEWRGMRRAYGAV WDMPNPPKGAISLRFQVSGSAGVTYWAQAANVIPSDWKAGIAYDSTVQLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Potri.003G083200 [exp]	0	1	PtrEXLB1,EXLB1.1
AT2G42560			late embryogenesis abundant do...		Potri.019G090300 [exp]	1.00	0.9824
AT2G38870			Serine protease inhibitor, pot...		Potri.002G042300 [exp]	2.23	0.9598
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.010G085300 [exp]	4.89	0.9658
AT5G38760			Late embryogenesis abundant pr...		Potri.004G107900 [exp]	6.48	0.9627
AT4G03540			Uncharacterised protein family...		Potri.004G043300 [exp]	7.21	0.9611
					Potri.017G080900 [exp]	8.48	0.9499
AT4G08570			Heavy metal transport/detoxifi...		Potri.002G092200 [exp]	8.48	0.9597
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.003G204801 [exp]	8.71	0.8522
AT1G52690		LEA7	LATE EMBRYOGENESIS ABUNDANT 7,...		Potri.001G173200 [exp]	9.53	0.9467
AT5G66440			unknown protein		Potri.005G229800 [exp]	10.95	0.9161

Compare expression of checked genes

Potri.003G083200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.