Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17040 442 / 2e-157 HON5, CLPR4 happy on norflurazon 5, CLP protease R subunit 4 (.1) AT1G09130 163 / 9e-48 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT1G49970 154 / 9e-44 SVR2, NCLPP5, CLPR1 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) AT5G23140 136 / 2e-38 NCLPP7, NCLPP2, CLPP2 nuclear-encoded CLP protease P7 (.1) AT1G12410 132 / 2e-36 EMB3146, CLP2, NCLPP2, CLPR2 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) AT1G02560 127 / 2e-34 NCLPP5, NCLPP1, CLPP5 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) AT5G45390 125 / 1e-33 NCLPP3, NCLPP4, CLPP4 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) AT1G66670 117 / 1e-30 NCLPP3, NCLPP4, CLPP3 CLP protease proteolytic subunit 3 (.1) AT1G11750 100 / 3e-24 NCLPP6, NCLPP1, CLPP6 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) ATCG00670 89 / 4e-21 PCLPP, ATCG00670.1, CLPP1 CASEINOLYTIC PROTEASE P 1, plastid-encoded CLP P (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G089300 [exp] 166 / 2e-48 AT1G49970 459 / 7e-162 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) Potri.013G017166 [exp] 144 / 2e-40 AT1G09130 451 / 2e-159 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.007G071700 [exp] 138 / 8e-39 AT5G23140 383 / 1e-135 nuclear-encoded CLP protease P7 (.1) Potri.005G092600 [exp] 136 / 2e-38 AT5G23140 380 / 3e-135 nuclear-encoded CLP protease P7 (.1) Potri.001G115900 [exp] 127 / 1e-34 AT1G12410 408 / 3e-145 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) Potri.002G195200 [exp] 127 / 2e-34 AT1G02560 474 / 2e-170 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.014G119700 [exp] 127 / 3e-34 AT1G02560 493 / 6e-178 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.001G295266 [exp] 120 / 4e-33 AT1G49970 306 / 5e-105 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) Potri.003G103300 [exp] 121 / 4e-32 AT5G45390 383 / 9e-135 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011014 [exp] 184 / 7e-57 AT4G17040 185 / 9e-58 happy on norflurazon 5, CLP protease R subunit 4 (.1) Lus10017397 [exp] 137 / 1e-38 AT5G23140 394 / 1e-140 nuclear-encoded CLP protease P7 (.1) Lus10010196 [exp] 136 / 3e-38 AT5G23140 395 / 4e-141 nuclear-encoded CLP protease P7 (.1) Lus10040982 [exp] 137 / 4e-38 AT5G23140 338 / 5e-118 nuclear-encoded CLP protease P7 (.1) Lus10013434 [exp] 130 / 9e-36 AT5G23140 347 / 3e-121 nuclear-encoded CLP protease P7 (.1) Lus10040981 [exp] 128 / 7e-35 AT5G23140 350 / 1e-122 nuclear-encoded CLP protease P7 (.1) Lus10007589 [exp] 116 / 2e-30 AT5G45390 293 / 2e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10013435 [exp] 117 / 5e-30 AT5G23140 209 / 5e-66 nuclear-encoded CLP protease P7 (.1) Lus10012156 [exp] 115 / 5e-30 AT5G45390 293 / 1e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10029891 [exp] 116 / 8e-29 AT3G05510 255 / 1e-79 Phospholipid/glycerol acyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [poplar] [flax] ClpP_crotonase PF00574 [poplar] [flax] CLP_protease Clp protease
Representative CDS sequence Show only first row Show all	>Potri.003G083300.1 pacid=42785111 polypeptide=Potri.003G083300.1.p locus=Potri.003G083300 ID=Potri.003G083300.1.v4.1 annot-version=v4.1 ATGGCGGTCGCAACTGCAACGGCATCGAGCTTCGGGTTCCACAAGCGCATGTTAGCATCACCCACGGTATCTTCACGAATTATAAATCCTAACAGAACCT TAGCTCTCTCTTCCTCCCCTTCTACTTCTTCTTCTTCAAGGGCCTCTCTTTCAACCTGCTTTCTCTCTCCCTTCGCTGGGGGAAGCATCACCTGCGACTT CTCCGGCACTAAAATTCGACCCGAATGCCTCAATCCAGCTTCAATTTCGAGTTCCAAAGGCAAAAGAAGCGTTGTTACCATGGTTATTCCATATACCAGG GGAAGTGCATGGGAGCAACCTCCTCCTGACTTGGCATCTTACTTGTTCAAAAACCGGATTGTTTACTTGGGGATGTCTCTTGTTCCTTCTGTCACGGAGT TAATACTAGCAGAATTTCTTTACCTTCAGTATGAAGATGAAGAGAAACCTATTTACCTATACATAAACTCCACGGGCACAACTAAGGGTGGGGAAAAGCT GGGATACGAGACAGAGGCTTTTGCTATCTATGATGTTATGGGGTATGTCAAGCCACCTATATTTACTCTTTGTGTTGGTAATGCTTGGGGAGAAGCAGCC TTGCTTTTGGCTGCTGGGTCAAGGGGAAACCGTTCTGCTTTACCCTCATCAACAATCATGATGAAGCAGCCAATTGGGAGATTTCAAGGTCAAGCAACAG ATGTTGAACTTGCCAGGAAAGAAATAAAGAATGTGAAAACAGAATTGGTCAATCTCTTGGCAAAGCATATTGGAAAATTACCTGAGGAGATTGAAGCAGA CATTAGTCGTCCAAAGTATTTTAGTCCAACTGAAGCAGTTGAATATGGCATCATAGACAAGGTAATATACAATGAAAGGACCACTGAAGACCGTGGAGTT GTTTCTGACCTTAAAAAGGCACAACTGATTTGA
AA sequence Show only first row Show all	>Potri.003G083300.1 pacid=42785111 polypeptide=Potri.003G083300.1.p locus=Potri.003G083300 ID=Potri.003G083300.1.v4.1 annot-version=v4.1 MAVATATASSFGFHKRMLASPTVSSRIINPNRTLALSSSPSTSSSSRASLSTCFLSPFAGGSITCDFSGTKIRPECLNPASISSSKGKRSVVTMVIPYTR GSAWEQPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAA LLLAAGSRGNRSALPSSTIMMKQPIGRFQGQATDVELARKEIKNVKTELVNLLAKHIGKLPEEIEADISRPKYFSPTEAVEYGIIDKVIYNERTTEDRGV VSDLKKAQLI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Potri.003G083300 [exp]	0	1
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.015G147100 [exp]	1.41	0.9823	Pt-HCF106.1
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000500 [exp]	1.73	0.9827
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Potri.006G119800 [exp]	3.16	0.9764	CYP97C4
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.009G057100 [exp]	4.47	0.9790	Pt-RPL1.1
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Potri.010G189800 [exp]	4.89	0.9718
AT1G09130			ATP-dependent caseinolytic (Cl...		Potri.013G017166 [exp]	5.19	0.9791
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Potri.005G055800 [exp]	6.92	0.9776
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Potri.008G117200 [exp]	7.41	0.9779
AT4G25370			Double Clp-N motif protein (.1...		Potri.012G129800 [exp]	7.48	0.9749
AT2G44870			unknown protein		Potri.004G030100 [exp]	7.93	0.9773

Compare expression of checked genes

Potri.003G083300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.