Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43530 1336 / 0 Helicase protein with RING/U-box domain (.1) AT5G22750 970 / 0 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT5G05130 358 / 1e-109 DNA/RNA helicase protein (.1) AT1G11100 341 / 1e-100 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT1G50410 334 / 1e-99 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G61140 328 / 2e-96 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT3G20010 315 / 5e-92 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT3G16600 279 / 1e-82 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G05120 235 / 3e-65 Helicase protein with RING/U-box domain (.1) AT1G02670 163 / 1e-41 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G189400 [exp] 969 / 0 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.006G035700 [exp] 342 / 3e-103 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.007G000700 [exp] 335 / 1e-99 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.004G037700 [exp] 340 / 2e-99 AT1G61140 1007 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.016G033800 [exp] 324 / 5e-97 AT5G05130 650 / 0.0 DNA/RNA helicase protein (.1) Potri.011G046400 [exp] 321 / 1e-92 AT1G61140 958 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.016G034000 [exp] 306 / 3e-90 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033700 [exp] 300 / 4e-88 AT5G05130 710 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033600 [exp] 288 / 7e-84 AT5G05130 674 / 0.0 DNA/RNA helicase protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041156 [exp] 1184 / 0 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10043365 [exp] 935 / 0 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10039001 [exp] 369 / 2e-113 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10011211 [exp] 332 / 3e-97 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10041008 [exp] 328 / 3e-97 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10013452 [exp] 315 / 3e-90 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10030044 [exp] 295 / 6e-85 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10027296 [exp] 218 / 5e-63 AT5G05130 470 / 1e-159 DNA/RNA helicase protein (.1) Lus10018465 [exp] 217 / 6e-58 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10019523 [exp] 195 / 2e-56 AT5G22750 257 / 3e-79 DNA/RNA helicase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit CL0023 [poplar] [flax] PF08797 [poplar] [flax] HIRAN HIRAN domain CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.003G083400.1 pacid=42786354 polypeptide=Potri.003G083400.1.p locus=Potri.003G083400 ID=Potri.003G083400.1.v4.1 annot-version=v4.1 ATGAGAACGCGAACAAGCACCGGGATTCGGGTCCAAACCCATGTCAGAAAAGAATTGGCTGATGAGAACGTTGCTGAAGTGGAAACCAGTGATTTCCCAG AAGAGATAGATTGGTACTTGGTTGGTGGCTCTCTTATTACCGCTTCATCAACTACTAAAGGAAGGAAATTGATGGACAATGAGATTGTCCATTTTGGTTT CTCTAGTTTTGGCTCCAAGTATCATAGACAGGGCATTATTCGATTCTCTACTAAAAGATTTGGAGAGATTGGTAGGCTTCCGATGGAGTGGGGAAAAAGT GTTGTTCCACTCGTGAGTTCTGGCAAGGTTAGAGTTCGTGGACGATGTGTAGCTGCACCAGAGAACCTTCAAATGTTGCAGGATGTTGTGTTGTATGTGA GTTTCTATGTTCACCAATCGATATTCACTGAGTTGTGTATTTCAACATGGAGGCTAGATGCTCCTCCAAACATTGATCCTACAGTTCACCCCCTTGCTAC TTTGTTCAAGTTACTGGACATGAAACCATATCAGAAGGCTGAATTTAGTCCTGCAGAACTTGACTCTCGAAAGCGACCCCTCAACTATGAAGATCCAGAG GAAGATGCCGTTATGTTGCATGTAGTAAAAAGGGGATCAGGATGCCAGCAAGACCAAGAGAAGGATGAACAAGCTTTCTCTGAGTCATCTTTGAATAAAC TTGTTGGTGCTGTAGATACATATGACTTGGAGGAGATGGAGCCTCCATGGACCCTAACCTGTAATTTGAAACCATATCAGAAACAAGCTCTCTATTGGAT GGCTGAATCAGAGAAGGGAAATAAAGCTGAGAAAGCAGCAGAAACTCTTAATCCATGTTGGGCAGCTTATCGCATATCGGACAAGAGGGCTTCATCGCCA AGCATTTATTTAAACATATTTTCTGGGGAAGCCACTACTCAATTTCCAACTGCATCACAGATGACAAAAGGGGGAATACTAGCTGATGCAATGGGACTTG GAAAGACAGTGATGACAATTGCTCTTATACTAGCAAGACCAGGCAAAGGAAGCTCTGACTGCAAAGAAAGAGTAAACAGAATAGAAGATCCCCGCACAAA TACCATGCCTAAAGCTAAGGGTGGCACTCTTATTATCTGCCCCATGGCTTTGCTAGGCCAGTGGAAGGATGAGCTTGAAACCCATTCAGAGCCAGGAAGC ATTTCCATTTTTGTTCACTATGGCGGGTACAAAACAAATAACCCCAGGATTATATCTGGATATGATGTGGTCTTGACAACATATGGCGTCCTAACTGAAG CTTACAAGCATGATATGGAGAACAGCATTTTTAATAGGGTTGAGTGGCATAGGGTGGTGCTAGATGAAGCTCATACCATCAAGTCCTGGAAGACCTTAGC TGCTAAGGCTACATTTTCATTGTCGTCATATTGCAAATGGTGTCTTACTGGGACACCTATTCAGAACACCTTGGAAGATCTGTACAGCCTTCTGTGCTTC TTGCATGTTGAGCCTTGGTGCAACTGGCCATGGTGGAACAAATTAATTCAAAGACCGCATGAAAATGGAGACCCTAGAGCCTTGAAGTTGATCAAGGCTA TTTTGAGGCCGCTAATGTTGAGAAGGACCAAGGATACAAAGGATAAGGAGGGAAGGCCCATACTTGTTCTTCCTCCAACTGACATTCAATTAATCAAGTG TGAACAATCGGAAGCTGAACGTGATTTTTATGATGCCCTTTTTAGAAGATCAAAAGTCCAGTTTGATGAGTTTGTTGCTCAGGGCAAGGTTCTGCACAAC TATGCATCTGTCCTTGAGCTGCTACTACGACTGAGGCAGTGTTGCAACCACCCATTTCTTGTTATGAGTCGAGCTGATATCCAACGATATGAGGAATTGA ACAAGTATGCAAGAAGGTTTGTGGAAACAAATTCTAATTTTTCCACTCCAAGGCAGTCAGCTGCCACCGAAGCATGCATTGAAGAGGTTGTTGAGGCCAT CCGCCATGCTAGTTCTGCCACCATAAGGCAATCAGCACCTACTCCAGCATACATTGAAGAGGTTGTTGAGGGCATCCGGAGGGGTGAAAATACCGAGTGT CCCATATGCATGGAGTCTGCAGATGACCCCGTGCTCACACCATGTGTACACAGGATGTGCAGGGAATGTCTCATCTCTTGCTGGCAAACACCAATATCAG GGATATGCCCAATCTGTCGAACTTCACTGAAAGCAAATGACCTGATAGCATGCCCAACAGAGGGTAAGTTCCAGGTTGATGTTGAGAATGACTGGAAGGA GTCTTCAAAGGTTTCCAAGCTTCTGGAATGCTTGGAACATATCCATAGGTCAGGCTTTGGTGAAAAGAGCATTGTTTTTAGCCAGTGGACTTCATTTTTG GATCTTTTAGAGATCCCACTGAAAAGGAGAGGAATTGGGTTCTTAAGGTTTGATGGAAAACTTGCACAGAAGCAGAGAGAGAGGACTTTGAAGGAGTTCA ATGAAACCAGGGAAAAAATGGTATTATTGATGTCTTTAAAAGCTGGTGGCGTAGGCCTGAATCTTACTGCAGCCTCAAATGTTTTCTTAATGGATCCATG GTGGAATCCTGCAGTCGAGGAGCAAGCAATAATGAGAATCCATCGGATAGGACAGAAGCGAACAGTTTTTGTTAGAAGATTCATTGTTGAGAGCACAGTT GAGGAACGCCTGCAGCAAGTTCAGGCAAAGAAGCAGAGAATGATTGCCGGTGCCCTCACCGACGAGGAAGTCAGGTCCGCTAGGATTGAGGAACTCAAAA TGCTCTTTAGATAA
AA sequence Show only first row Show all	>Potri.003G083400.1 pacid=42786354 polypeptide=Potri.003G083400.1.p locus=Potri.003G083400 ID=Potri.003G083400.1.v4.1 annot-version=v4.1 MRTRTSTGIRVQTHVRKELADENVAEVETSDFPEEIDWYLVGGSLITASSTTKGRKLMDNEIVHFGFSSFGSKYHRQGIIRFSTKRFGEIGRLPMEWGKS VVPLVSSGKVRVRGRCVAAPENLQMLQDVVLYVSFYVHQSIFTELCISTWRLDAPPNIDPTVHPLATLFKLLDMKPYQKAEFSPAELDSRKRPLNYEDPE EDAVMLHVVKRGSGCQQDQEKDEQAFSESSLNKLVGAVDTYDLEEMEPPWTLTCNLKPYQKQALYWMAESEKGNKAEKAAETLNPCWAAYRISDKRASSP SIYLNIFSGEATTQFPTASQMTKGGILADAMGLGKTVMTIALILARPGKGSSDCKERVNRIEDPRTNTMPKAKGGTLIICPMALLGQWKDELETHSEPGS ISIFVHYGGYKTNNPRIISGYDVVLTTYGVLTEAYKHDMENSIFNRVEWHRVVLDEAHTIKSWKTLAAKATFSLSSYCKWCLTGTPIQNTLEDLYSLLCF LHVEPWCNWPWWNKLIQRPHENGDPRALKLIKAILRPLMLRRTKDTKDKEGRPILVLPPTDIQLIKCEQSEAERDFYDALFRRSKVQFDEFVAQGKVLHN YASVLELLLRLRQCCNHPFLVMSRADIQRYEELNKYARRFVETNSNFSTPRQSAATEACIEEVVEAIRHASSATIRQSAPTPAYIEEVVEGIRRGENTEC PICMESADDPVLTPCVHRMCRECLISCWQTPISGICPICRTSLKANDLIACPTEGKFQVDVENDWKESSKVSKLLECLEHIHRSGFGEKSIVFSQWTSFL DLLEIPLKRRGIGFLRFDGKLAQKQRERTLKEFNETREKMVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVESTV EERLQQVQAKKQRMIAGALTDEEVRSARIEELKMLFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43530			Helicase protein with RING/U-b...		Potri.003G083400 [exp]	0	1
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Potri.015G070300 [exp]	2.82	0.9139
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Potri.018G102100 [exp]	3.46	0.8939
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Potri.007G028000 [exp]	4.47	0.8552
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Potri.007G000900 [exp]	4.47	0.8854
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Potri.015G057300 [exp]	5.29	0.9129
AT3G54650		FBL17	RNI-like superfamily protein (...		Potri.002G044800 [exp]	5.47	0.8597
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103100 [exp]	7.41	0.8642
AT2G36200			P-loop containing nucleoside t...		Potri.006G210700 [exp]	7.74	0.8842
AT3G18800			unknown protein		Potri.019G006500 [exp]	9.79	0.8679
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Potri.004G141500 [exp]	10.19	0.8641

Compare expression of checked genes

Potri.003G083400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.