Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	LIL3.2,Lil3_2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17600 300 / 4e-103 LIL3:1 Chlorophyll A-B binding family protein (.1) AT5G47110 291 / 1e-99 LIL3:2 Chlorophyll A-B binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G151300 [exp] 413 / 7e-148 AT4G17600 268 / 2e-90 Chlorophyll A-B binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040147 [exp] 303 / 4e-104 AT4G17600 289 / 1e-98 Chlorophyll A-B binding family protein (.1) Lus10001008 [exp] 280 / 3e-95 AT4G17600 270 / 2e-91 Chlorophyll A-B binding family protein (.1) Lus10011016 [exp] 279 / 4e-95 AT4G17600 273 / 1e-92 Chlorophyll A-B binding family protein (.1) Lus10000959 [exp] 0 / 1 AT4G17600 141 / 3e-65 Chlorophyll A-B binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [poplar] [flax] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Potri.003G083500.2 pacid=42786066 polypeptide=Potri.003G083500.2.p locus=Potri.003G083500 ID=Potri.003G083500.2.v4.1 annot-version=v4.1 ATGTCCATATCAATGTCTTTGTTCTCTCCGCCACTAACTCGCTTTCCACCTTCCAAACCCCATTTCACCTACAAATCGACACTCTCTCTCGGACCCACGA ACCGTCCTTTTCTCCTATCCACTCCCAAGGCCTCTACAGACAATGGAGGAGCTGGAGTTTCAGCCTCCGCTGCCACTGTAGAGGAACCAAAATTGGAGCA GAAGACACCAGAGTCTTCTGATTCAGTTCCTGTGGCTAAAAATAGCTCTAATGGAGCTGTGGCTGCTGGGGGAGAGGAGAAGGTTGAAGTGAGTAAATTT GGGGACCCCAGGTGGATTTCAGGGACTTGGGACTTGAAGCAGTTTCAGAAAGATGGGAAAACCGATTGGGATGCTGTTATCGATGCCGAGGCTAGGAGGA GGAAATGGCTCCAGTGTAACCCAGAATCATCAAGCAACAACGACCCTGTTGTTTTTGATACCTCAATAATACCATGGTGGACATGGATGAAAAGATTCCA TCTGCCGGAAGCAGAACTTCTCAATGGCCGTGCTGCAATGATTGGGTTTTTCATGGCTTACCTGGTTGATAGCTTGACTGGTGTTGGTCTGGTTGATCAG ATGAGCAACTTCTTCTGCAAAACTCTATTATTTGTAGCTGTGGTAGGGGTGCTTCTAATACGGAAGAATGAGGATTTAGAAACCATAAAAAAGTTGCTGG AGGAGACAACCTTCTATGACAAGCAATGGCAAGCAACCTGGCAGGATGAGAAATCCACCAGCCCCAAAGATGATTAG
AA sequence Show only first row Show all	>Potri.003G083500.2 pacid=42786066 polypeptide=Potri.003G083500.2.p locus=Potri.003G083500 ID=Potri.003G083500.2.v4.1 annot-version=v4.1 MSISMSLFSPPLTRFPPSKPHFTYKSTLSLGPTNRPFLLSTPKASTDNGGAGVSASAATVEEPKLEQKTPESSDSVPVAKNSSNGAVAAGGEEKVEVSKF GDPRWISGTWDLKQFQKDGKTDWDAVIDAEARRRKWLQCNPESSSNNDPVVFDTSIIPWWTWMKRFHLPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQ MSNFFCKTLLFVAVVGVLLIRKNEDLETIKKLLEETTFYDKQWQATWQDEKSTSPKDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Potri.003G083500 [exp]	0	1	LIL3.2,Lil3_2
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Potri.012G145600 [exp]	1.00	0.9311
AT3G25805			unknown protein		Potri.010G127200 [exp]	4.47	0.9083
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Potri.019G024000 [exp]	5.65	0.9130	PtrcPrxIIF,Pt-PRX.1
AT1G49510		EMB1273	embryo defective 1273 (.1)		Potri.005G149500 [exp]	12.00	0.8967
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Potri.009G096300 [exp]	13.89	0.8610
AT2G17695			unknown protein		Potri.005G105500 [exp]	14.21	0.8751
AT1G21350			Thioredoxin superfamily protei...		Potri.002G071000 [exp]	17.32	0.9284
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.007G085000 [exp]	20.39	0.8961
AT2G33855			unknown protein		Potri.004G048400 [exp]	21.49	0.9137
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Potri.002G072400 [exp]	23.06	0.8953

Compare expression of checked genes

Potri.003G083500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.