Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17050 469 / 2e-168 UGLYAH ureidoglycine aminohydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G150800 [exp] 299 / 2e-102 AT4G17050 259 / 5e-87 ureidoglycine aminohydrolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040144 [exp] 439 / 4e-155 AT4G17050 422 / 7e-149 ureidoglycine aminohydrolase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G083600.1 pacid=42787381 polypeptide=Potri.003G083600.1.p locus=Potri.003G083600 ID=Potri.003G083600.1.v4.1 annot-version=v4.1 ATGCTAACCTCATCGCTACCGTCTCTCCTCCTCCTACTCTCTCTATCATCAAATTTTTTGAATGTAGCTTTGAGTGATGATGGCGGAGGATTATTCTGTT CTGCTCCTTCAGTGTTTGAAACCGAAACGGCCGCCTCCTCCTCCTCCAAACCTCTATATTGGAAAGTCACTAATCCAACGCTCTCTCCTTCTCACCTTCA AGACTTGCCAGGTTTCACACGTAGTGTTTATAAAGGAGACCATGCTTTGATGACACCAGAAAGTCATGTATTCAGTCCTTTACCAGGATGGACAAATACA TTGGGGGCATATCTAATTACGCCAGCTATGGGTTCCCACTTTGTGATGTACTTAGCAAAGATGCAAGAAAATTCAAAGTCTGGACTCCCTCCAAATGATG TAGAGAGGTTCTTGTTCGTGGTTCAGGGTTCTGCAACTCTGACTAATGCATCTGGTGCCCACCACCAACTGATGGTGGATTCATATGCTTATCTAGCCCC AAATTCCAAACATTCTCTGGAGTGTGATGCATCAGCTACTCTAGTTGTCTTTGAACGCAGGTATTCTCCTCTTGAAAATCATTTTACTAAGCAAATTGTT GGTTCAACAGACCAGCAGCCACTTCTTGAAACTCCAGGCGAGGTTTTTGAACTCAGAAAGCTTCTGCCTCCATCATTGCCATATGACTTCAATATCCATA TAATGGATTTTCAACCTGGAGAATTCCTTAATGTGAAGGAGGTGCATTATAATCAGCATGGTTTGCTGCTATTAGAGGGACAGGGTATTTATCGTTTGGG TGATAGCTGGTACCCAGTTCAATCTGGGGATGCCATTTGGATGGCCCCATTTGTACCCCAATGGTACGCCGCACTTGGTAAGACCCGTTCACGATATTTG CTGTACAAAGACGTGAATAGGAATCCATTGTAA
AA sequence Show only first row Show all	>Potri.003G083600.1 pacid=42787381 polypeptide=Potri.003G083600.1.p locus=Potri.003G083600 ID=Potri.003G083600.1.v4.1 annot-version=v4.1 MLTSSLPSLLLLLSLSSNFLNVALSDDGGGLFCSAPSVFETETAASSSSKPLYWKVTNPTLSPSHLQDLPGFTRSVYKGDHALMTPESHVFSPLPGWTNT LGAYLITPAMGSHFVMYLAKMQENSKSGLPPNDVERFLFVVQGSATLTNASGAHHQLMVDSYAYLAPNSKHSLECDASATLVVFERRYSPLENHFTKQIV GSTDQQPLLETPGEVFELRKLLPPSLPYDFNIHIMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQSGDAIWMAPFVPQWYAALGKTRSRYL LYKDVNRNPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Potri.003G083600 [exp]	0	1
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.006G020900 [exp]	1.00	0.8003	POP2.2
AT1G05065		CLE20	CLAVATA3/ESR-RELATED 20 (.1)		Potri.002G226300 [exp]	3.46	0.7617
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Potri.009G074100 [exp]	4.89	0.7982	ZIP6.2
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Potri.005G190700 [exp]	6.32	0.7533
AT5G39390			Leucine-rich repeat protein ki...		Potri.019G100901 [exp]	6.92	0.7796
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Potri.003G030400 [exp]	12.64	0.7372
AT2G01680			Ankyrin repeat family protein ...		Potri.008G134500 [exp]	13.00	0.7220
AT3G10910			RING/U-box superfamily protein...		Potri.019G057700 [exp]	16.61	0.7479
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Potri.016G112300 [exp]	21.33	0.7415
AT4G35250			NAD(P)-binding Rossmann-fold s...		Potri.009G143000 [exp]	23.06	0.7185

Compare expression of checked genes

Potri.003G083600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.