Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44730 122 / 7e-31 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT4G17060 106 / 2e-25 FIP2 FRIGIDA interacting protein 2 (.1) AT3G24860 83 / 2e-17 Trihelix Homeodomain-like superfamily protein (.1) AT3G58630 70 / 5e-13 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G10030 64 / 1e-10 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT3G54390 58 / 3e-09 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G14180 57 / 2e-08 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT3G11100 54 / 7e-08 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G24490 54 / 1e-07 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT5G05550 49 / 3e-06 Trihelix sequence-specific DNA binding transcription factors (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G150600 [exp] 657 / 0 AT2G44730 114 / 6e-28 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.014G051200 [exp] 118 / 2e-29 AT2G44730 239 / 3e-76 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.002G139500 [exp] 118 / 2e-29 AT2G44730 252 / 3e-81 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.002G243300 [exp] 94 / 3e-21 AT3G24860 167 / 8e-50 Homeodomain-like superfamily protein (.1) Potri.001G113600 [exp] 71 / 2e-13 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.003G118600 [exp] 69 / 7e-13 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.010G233500 [exp] 60 / 2e-09 AT3G10030 434 / 3e-148 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.003G195300 [exp] 59 / 2e-09 AT3G54390 288 / 2e-96 sequence-specific DNA binding transcription factors (.1) Potri.008G027000 [exp] 59 / 3e-09 AT3G10030 457 / 2e-157 aspartate/glutamate/uridylate kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000963 [exp] 275 / 4e-88 AT2G44730 124 / 7e-32 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10040141 [exp] 263 / 2e-83 AT2G44730 123 / 1e-31 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10011020 [exp] 183 / 2e-53 AT2G44730 123 / 7e-32 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10001004 [exp] 88 / 2e-19 AT4G17060 80 / 4e-17 FRIGIDA interacting protein 2 (.1) Lus10011851 [exp] 86 / 1e-18 AT3G24860 140 / 1e-39 Homeodomain-like superfamily protein (.1) Lus10022789 [exp] 86 / 3e-18 AT3G24860 141 / 7e-40 Homeodomain-like superfamily protein (.1) Lus10015282 [exp] 71 / 2e-14 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10025404 [exp] 72 / 7e-14 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025406 [exp] 72 / 1e-13 AT3G14180 202 / 3e-63 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10007273 [exp] 69 / 1e-12 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G083800.11 pacid=42785706 polypeptide=Potri.003G083800.11.p locus=Potri.003G083800 ID=Potri.003G083800.11.v4.1 annot-version=v4.1 ATGTCAACAGCACCATCTTCTGATTTCACCACCAAGCGGGTCCCTCCGCCATGCTGGACCCAAGAAGAGTCACTTGCCCTAATCAAAGCCTACCGTGACA AATGGTACTCCGTCAACCGCGGAAATCTCCGCGTCGCCGACTGGGAAGCCGTGGCCGCTGCCGTCCCACTTAAATCGTCCCTCCAGTGCCGCCACAAGAT CGAGAAGCTTCGGAAACGGTATCGTGCGGAAAAACAGAAGTGTCTAAAGCACCCAGGTCGGTTTTTTTCTTCTTGGGATTTGTTCCCTTTGTTAGATTCA ATGGAAATTGGGTCTCTAGGGTCTAAAGTAGAGCAAGAAATCGATAAAGGGAATGATGCTGGCGATGGGATTTGTGTAAAAACGTTAGGAGATAGGTATT TGCTGACTGCTCAAAAGAATGGGAAAATTAATGGGGATTTGGACCCAGATGAGGTTTTCGATTTGGATCCAGATTTTGCTCTTCGGGCTAGGAAATATAG CAAGGTGGATGGAGGTTTCAGTGTTAGTAAGGATTCGGGAAGTGGGTTTGGTGTTAGCTCTGTTGCATTTAGACCTAATGATTATGTTGGAGTTAATGGG AATATTAAGGCTAATGTTGGTTTTAATTGTGATCATGGAGGCGAGGTTGGTTATAAAATGGAAAAAACACAAGGGGATAGGCGCTTTATGCCTCAGGGAG TTAGATTACCGGATCACGGAATGATGGCTGATCATTATGGCTCATATAATAGTGATTTTTCTAAAGGTGTCGATGTCTACGAAGGGTTTCCGCTGAAGTC CTTAGGTGATAGGAATTTGCCGATGCAGGGGCTTAACCCAAAGAACTATAAAAAGATTGATAGGAAGCCCACTCCTGATTTTTGTGATGATGATCATGTG GAGATTGACTATAGAATTGATAAAAGAGATAGGTTTGGCAAAAAAGTTAATGATGGTTGGAGTTCCTCATTTCCAGGGTTTATACCAAATAACTGTGGCA ATATTGATGGGAAGTCGAGGTCTGATTCTCGCTCTAGGGCTTTGAAGGGGTCTGTGAATGTTGGGACGAATGGCATTGGTGATGGAGTTAGGAGAGAGGC AGATTCGGTTGCGTTGTTGGTGTCAGCAATTGAGCAGGCTACAGAAAGCTTTGTGAAGGTGGAGATGATGAAGATGGACATGGCGATGGAGATTGAGAAA ATGAGGATGGAAATGGGGTTGAAGCATAACCAGATGATACTTGAGTCACAGCAACAGATTGTGGATGCACTTGCGAAAGCCATGCTGGAAAAGAAGAAAA GGAGGAAAGTGGAGGTGCTGTCATCCAATTCAAACAGAAATGGATATACTCAAGTTGCTGCAGTGGATTGTGAAAGCATTGGTAAAAGTAGTATAGTAAA AGAAAGCGAAGCTTGTGTCAGCTGA
AA sequence Show only first row Show all	>Potri.003G083800.11 pacid=42785706 polypeptide=Potri.003G083800.11.p locus=Potri.003G083800 ID=Potri.003G083800.11.v4.1 annot-version=v4.1 MSTAPSSDFTTKRVPPPCWTQEESLALIKAYRDKWYSVNRGNLRVADWEAVAAAVPLKSSLQCRHKIEKLRKRYRAEKQKCLKHPGRFFSSWDLFPLLDS MEIGSLGSKVEQEIDKGNDAGDGICVKTLGDRYLLTAQKNGKINGDLDPDEVFDLDPDFALRARKYSKVDGGFSVSKDSGSGFGVSSVAFRPNDYVGVNG NIKANVGFNCDHGGEVGYKMEKTQGDRRFMPQGVRLPDHGMMADHYGSYNSDFSKGVDVYEGFPLKSLGDRNLPMQGLNPKNYKKIDRKPTPDFCDDDHV EIDYRIDKRDRFGKKVNDGWSSSFPGFIPNNCGNIDGKSRSDSRSRALKGSVNVGTNGIGDGVRREADSVALLVSAIEQATESFVKVEMMKMDMAMEIEK MRMEMGLKHNQMILESQQQIVDALAKAMLEKKKRRKVEVLSSNSNRNGYTQVAAVDCESIGKSSIVKESEACVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.003G083800 [exp]	0	1
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.014G197600 [exp]	1.41	0.8631
AT1G03080			kinase interacting (KIP1-like)...		Potri.005G213400 [exp]	2.23	0.7690
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.002G217200 [exp]	3.16	0.8286
AT3G15470			Transducin/WD40 repeat-like su...		Potri.001G403400 [exp]	3.87	0.8104
AT4G00800		SETH5	transducin family protein / WD...		Potri.014G105601 [exp]	5.65	0.7975
AT3G15470			Transducin/WD40 repeat-like su...		Potri.011G122500 [exp]	6.00	0.7677
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Potri.017G078800 [exp]	6.00	0.7445	GN.2
AT2G25430			epsin N-terminal homology (ENT...		Potri.018G026900 [exp]	6.16	0.7131
AT3G58050			unknown protein		Potri.016G060200 [exp]	7.48	0.7668
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Potri.015G045600 [exp]	10.81	0.7564

Compare expression of checked genes

Potri.003G083800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.