Plant FIBer expression Database

Potri.003G083900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G17070 484 / 2e-173 peptidyl-prolyl cis-trans isomerases (.1)
AT4G33380 50 / 1e-06 unknown protein
AT1G01940 44 / 4e-05 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G150300
[exp]
629 / 0 AT4G17070 475 / 1e-169 peptidyl-prolyl cis-trans isomerases (.1)
Potri.014G051300
[exp]
468 / 7e-167 AT4G17070 436 / 4e-154 peptidyl-prolyl cis-trans isomerases (.1)
Potri.002G139600
[exp]
437 / 4e-155 AT4G17070 405 / 3e-142 peptidyl-prolyl cis-trans isomerases (.1)
Potri.002G127700
[exp]
49 / 2e-06 AT4G33380 300 / 8e-101 unknown protein
Potri.014G031900
[exp]
49 / 3e-06 AT4G33380 331 / 3e-113 unknown protein
Potri.005G148900
[exp]
43 / 0.0003 AT5G67530 806 / 0.0 plant U-box 49 (.1)
Potri.002G149700
[exp]
40 / 0.0006 AT1G01940 293 / 3e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037182
[exp]
341 / 5e-118 AT4G17070 306 / 3e-104 peptidyl-prolyl cis-trans isomerases (.1)
Lus10036745
[exp]
335 / 2e-116 AT4G17070 298 / 6e-102 peptidyl-prolyl cis-trans isomerases (.1)
Lus10009237
[exp]
45 / 2e-05 AT1G01940 317 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Lus10009765
[exp]
45 / 5e-05 AT4G33380 392 / 2e-137 unknown protein
Lus10006482
[exp]
42 / 0.0006 AT4G33380 194 / 9e-60 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0475 Cyclophil-like PF00160 Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence
>Potri.003G083900.1 pacid=42785884 polypeptide=Potri.003G083900.1.p locus=Potri.003G083900 ID=Potri.003G083900.1.v4.1 annot-version=v4.1
ATGGGTCGCCGCCAAAACGACTCTGAGCCATCCCGTTTCATCTCTCTATCCTTCCTCTTGGTGGGATTGATTTCTTGTGCTTTAGTCTACACTGTCCTCT
CCGTCGTTCTCAATCCTAATATAAGTTCTAAAGGTTCGAACTTTGAGTCTTTAGCACTGACAGAGGAGAGTAGTGATGGTGGGTGCTGTAGAGGGATTGA
GAAGTTGGAGCTTTGGGGAGCTGCCGTGAAGTGGGGGTCAGATTTTAAGTTCAATTCTTCCAAGGAGTGCTGTCAGGCTTGTAAGGCTATGTGCACTGGC
ATTGATGGGCCGTGCTTGTGTGATACCTGGGTGTTTTGTGGCAATAAAAAGGCTTGTGGATCTAAATTTGGTGAGTGTTGGCTGAAGAAGCAAAAGGATG
TATTTGCCCCTGATCGACAGGAAGCAGGTGACCCTGTTATTTGGACTTCTGGGATTGTCTTTGGAAAAGGAGAGGGCATTGTTGGCCTGGAAACAGAATT
TGGCACTCTTCATATAAAACTCTTCCCAGACTGTGCTCCCCATTCTGTAGCCTACATTCTTGAGTTGCTCACTCTGCGTCATTGTGCTGGTTGCCAATTT
CATCGTGCCGAGGGCCGATGTCAATTGTGGGATGCAGAAGGGAACCACATAAAAAAGGCTCCTTTTGGCCCTCCTTTTGCAATGATTCAAGGGACACTAG
AAGCTCAAGGAACATCATTCAAGAAAATTCCAACTGAAGAGTGCCCATACATAAGAAGGGGTTCAGTAGCCTGGGTTGGCTCTGGTCCAGAATTCTTCAT
TAGCCTAGCCAATCACCAAGAATGGAAGAAAGCATACACTGTCTTCGGTTCTGTTCTTCCAGAAGACATGGAAATTGCTGAGAAAATTGCCCAGCTCCCC
ACCAAATCTGATGTTTGGAACAATATTAATGTCTCTGTCTTAGAAAAGCCACTTCCCTTGCTGGTCAGAAGACTCAAGGCAAGACAGGGAAATCTAAACA
AAATGTGA
AA sequence
>Potri.003G083900.1 pacid=42785884 polypeptide=Potri.003G083900.1.p locus=Potri.003G083900 ID=Potri.003G083900.1.v4.1 annot-version=v4.1
MGRRQNDSEPSRFISLSFLLVGLISCALVYTVLSVVLNPNISSKGSNFESLALTEESSDGGCCRGIEKLELWGAAVKWGSDFKFNSSKECCQACKAMCTG
IDGPCLCDTWVFCGNKKACGSKFGECWLKKQKDVFAPDRQEAGDPVIWTSGIVFGKGEGIVGLETEFGTLHIKLFPDCAPHSVAYILELLTLRHCAGCQF
HRAEGRCQLWDAEGNHIKKAPFGPPFAMIQGTLEAQGTSFKKIPTEECPYIRRGSVAWVGSGPEFFISLANHQEWKKAYTVFGSVLPEDMEIAEKIAQLP
TKSDVWNNINVSVLEKPLPLLVRRLKARQGNLNKM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G17070 peptidyl-prolyl cis-trans isom... Potri.003G083900
[exp]
0 1
Potri.018G078801
[exp]
8.12 0.8725
AT1G50600 GRAS SCL5 scarecrow-like 5 (.1) Potri.011G131100
[exp]
8.24 0.8821
AT4G37640 ACA2 calcium ATPase 2 (.1) Potri.007G055500
[exp]
11.40 0.8804 Pt-ACA2.1
AT2G17290 ATCPK6, ATCDPK3... calcium dependent protein kina... Potri.009G168600
[exp]
14.69 0.8422 CDPK3.2
AT4G27220 NB-ARC domain-containing disea... Potri.019G014334
[exp]
19.89 0.8349
AT1G19270 DA1 DA1 (.1) Potri.014G039900
[exp]
20.17 0.8159
AT4G39830 Cupredoxin superfamily protein... Potri.007G088290
[exp]
20.19 0.8702
AT1G01490 Heavy metal transport/detoxifi... Potri.017G147000
[exp]
22.02 0.8623
AT3G45640 ATMAPK3, ATMPK3 mitogen-activated protein kina... Potri.009G066100
[exp]
22.75 0.8545 Pt-MPK3.2
AT5G18150 Methyltransferase-related prot... Potri.019G035000
[exp]
26.26 0.8099

Potri.003G083900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.