Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 144 / 2e-37 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17880 96 / 5e-21 CSA1 constitutive shade-avoidance1, disease resistance protein (TIR-NBS-LRR class) (.1) AT4G12010 95 / 1e-20 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45230 91 / 2e-19 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 88 / 2e-18 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G38350 87 / 5e-18 Disease resistance protein (NBS-LRR class) family (.1) AT1G69550 86 / 9e-18 disease resistance protein (TIR-NBS-LRR class) (.1) AT1G27170 86 / 1e-17 transmembrane receptors;ATP binding (.1.2) AT3G25510 85 / 2e-17 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G45200 85 / 2e-17 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G007884 [exp] 306 / 3e-94 AT5G36930 654 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 301 / 2e-92 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 290 / 4e-88 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G135700 [exp] 284 / 2e-86 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 274 / 1e-82 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G037599 [exp] 266 / 6e-80 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 253 / 3e-75 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G016425 [exp] 231 / 3e-67 AT5G36930 650 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 223 / 3e-64 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018616 [exp] 149 / 6e-39 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 135 / 3e-34 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10005171 [exp] 134 / 7e-34 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011741 [exp] 112 / 3e-26 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 109 / 3e-25 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 92 / 1e-19 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10033825 [exp] 91 / 2e-19 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10030839 [exp] 91 / 2e-19 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10003749 [exp] 87 / 6e-18 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10019708 [exp] 87 / 7e-18 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G084366.1 pacid=42786920 polypeptide=Potri.003G084366.1.p locus=Potri.003G084366 ID=Potri.003G084366.1.v4.1 annot-version=v4.1 ATGGGACTCCCTTGTCTGGAGAGAATTATACTTGAAGGTTGCACAAGTTTAGTTGAGGTTCATCAATCTATTGGACATTTGGATAGCCTGACTTTGTTGA ATCTGGAGGGATGCAAGAGTCTGAAGAATCTTCCAGAAAGCATTTGCTACTTGAAATGCCTTGAAAGTCTAAACATTTCCAGGTGCATAAACCTTGAGAA ATTGCCCGATCAGTTGGGTGATATGGAAGCCTTAACCATGCTTCTAGCAGATGGAACTGCAATTGAGCGACTACCATCTTCCATTGGACATTTGAAGAAC CTCAGTAATTTATCGTTGGGTGGATTCAAATATGACTTATCATCAGTATCTTGGTTTTCACATATTTTACCTTGGCTTTCACCAAGAATTTCAAACCCCA GAGCTTTGCTTCCAACTTTTACTGGCTTAAACTCATTGAGAAGACTAGATCTGAGTTACTGTGGTCTATCTGATGGGACAGATCTTGGGGGGTTATCCTC ACTTCAAGAATTGAATTTCACGAGAAACAAGCTCAATAATCTGCCTAATGGCATAGATAGACTTCCCGAGCTACAAGTATTGTGCCTGTACCATTGTGCA GATCTTCTATCAATCTCAGATCTTCCCTCAACTTTGCACTCTTTGATGGTGTATCATTGCACATCCATAGAAAGATTATCTATTCATTCGAAAAACGTAC CAGATATGTATCTAGTTAATTGCCAACAACTATCTGATATTCAGGGTTTAGGAAGCGTGGGAAATAAACCACTCATTTATGTTGACAACTGCAGCAAACT GGCAAATAATTTCAAGAGTCTTCTTCAGGCATCGTTCAAGGGCGAGCATCTTGACATTTGCCTCCGCGACAGTGAGATACCGGATTGGTTCAGTCATCGT GGAGATGGATCATCGATATCTTTTTATGTACCAGACAGTGAAATTCAAGGATTGATTGTCTGGATTGTCTGCGGAGCTAGCGAAAGAAGACTTCCCCTAC CTTACGCTTCTGCCACGATTAGAAATAAGAGCAAAGGTGTTCGATTGTTTCATTGGTCAACATTTATCCCGCTATATTATTCAAAACCTGCATATCATTC TTGGGTGAACTATGTAACATTTAGTCGGCTTCCATGTGCAATGGAAGGTGGAGAAGTAGTGGAACACTCTGTCAAAATAACCAATGGCGTTGTTGTGGAC AAGTGTGGCGTCCATCTGATATCAAAAGAGTGA
AA sequence Show only first row Show all	>Potri.003G084366.1 pacid=42786920 polypeptide=Potri.003G084366.1.p locus=Potri.003G084366 ID=Potri.003G084366.1.v4.1 annot-version=v4.1 MGLPCLERIILEGCTSLVEVHQSIGHLDSLTLLNLEGCKSLKNLPESICYLKCLESLNISRCINLEKLPDQLGDMEALTMLLADGTAIERLPSSIGHLKN LSNLSLGGFKYDLSSVSWFSHILPWLSPRISNPRALLPTFTGLNSLRRLDLSYCGLSDGTDLGGLSSLQELNFTRNKLNNLPNGIDRLPELQVLCLYHCA DLLSISDLPSTLHSLMVYHCTSIERLSIHSKNVPDMYLVNCQQLSDIQGLGSVGNKPLIYVDNCSKLANNFKSLLQASFKGEHLDICLRDSEIPDWFSHR GDGSSISFYVPDSEIQGLIVWIVCGASERRLPLPYASATIRNKSKGVRLFHWSTFIPLYYSKPAYHSWVNYVTFSRLPCAMEGGEVVEHSVKITNGVVVD KCGVHLISKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.003G084366 [exp]	0	1
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093833 [exp]	9.94	0.6691
AT2G21120			Protein of unknown function (D...		Potri.001G305700 [exp]	23.68	0.5926
AT2G33500	CO	COL14	B-box type zinc finger protein...		Potri.001G061800 [exp]	31.62	0.5894	COL3.2
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Potri.010G225200 [exp]	52.30	0.5929
AT5G12000			Protein kinase protein with ad...		Potri.006G225300 [exp]	86.98	0.5069
AT1G79910			Regulator of Vps4 activity in ...		Potri.003G054500 [exp]	99.94	0.5738
AT5G49830		EXO84B	exocyst complex component 84B ...		Potri.008G009100 [exp]	114.78	0.5573
AT3G55550			Concanavalin A-like lectin pro...		Potri.016G101000 [exp]	135.94	0.5492	Pt-LECRK7.1
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Potri.014G169400 [exp]	262.53	0.4967

Compare expression of checked genes

Potri.003G084366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.